XLOC_028490 (foxp2)


Basic Information

Item Value
gene id XLOC_028490
gene name foxp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6423041 ~ 6623645 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055290
GATGTATTGAATCAAGATACAAAAAAACAAGCCGCCGCTTCGCGTTGCGCGTCATGCAAGCGCATTCAAACAGGAGTCGGTGTTACTcgggcgttttttttttttactgttgcatCGGTAATAACAGCAGCACACACTGACTGAAGACAGCAGCGTCTCTGCACTCCGAGCGGAGGAATATCAACAGCGCGTGTTGTGCGTTTGTTTTCagcgctttttaaaaacactccGACTCGTAAACACGCAAAACTTTGCATCCCCGAAGGAGATACATTGACTTCTTTTGATTCTCTCATACTTGGACTCGCCTCTCCCAAACAAACACGGACATCAACCGAAAGTTTCCCCTCAGGGATGAGACCTGGTATGGCCGTTGTTCACAGCGCAGCAGGAGTACTCTGAAACCAAGGCAAAAGTGGCCCTACAAGCAGCAAGGCAATTACTCCTACAGCAACCAGGCAGTGGCCTGAAATCTCCAAAGAACAACGACAAACAGCGTCCGTTGCAGGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAAGTCCTTTCCCCCCAGCAGCTCCAAGCCCTCTTACAACAACAACAGGCAGTCATGCTTCAGCagCAACACCTGCAGGAGTTTTATAAGAAACAACAGGAACAACTTCATCTACAGCTTTTGCAGCAACAGCACCCAGGCAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCGGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGCaactgcagcagcagcagcacctgCTCAACATGCAGAGGCAGGGCCTCCTCTCTATGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACGTCCACTACCTCCACCAGCAACCCCAAAGCTTCTCCACCCATCACTCATCACAGCATGTCCAACGGCCAGTCCCCAGCCCTCAACAACAACCGGAGAGAGAGCTCATTGCATGAAGAGACCGCAGTGTCACACTCCCTCTATGGCCACGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGCGATGACTTTGGACAGTTTTTGAAGCACCTTAACAATGAACACGCACTGGATGACAGGAGTACTGCGCAGTGCCGAGTACAGATGCAGGTGGTACAACAGCTAGAGATACAGCTTTCTAAAGAACGCGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGTTGAATCTGGTCTCCAGTGTCACCATGTCAAAGAACCTCCCGTCCATCTCACCCCCAAATTTACCTCAGACGCCAACCACGCCCACTGCTCCAGTCACACCTCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGTCCCGCCAATGTGCCCAGCATGGGTGCCATGCGTAGACGCCACACCGACAAATACTCCATGGCCTTGTCCTCAGAAATCGCCCCAAACTACGAGTTTTACAAGAACGCCGACGTCAGGCCGCCGTTTACTTATGCAACCCTCATCAGGCAGGCTATCATGGAGTCAAGTGACATGCAGCTAACGCTCAACGAAATCTACAGCTGGTTCACGCGCACCTTCGCCTACTTCCGACGCAACGCCGCCACCTGGAAGAACGCAGTGCGACACAACCTCAGCCTGCACAAGTGTTTCGTCCGAGTAGAGAACGTGAAGGGCGCCGTATGGACCGTGGACGAGATGGAATACCAGAAACGCAGGTCACAGAAGATTAcaggGAGCCCGACGCTGGTCAAAAACCTGCCGTCCAGTCTGGGTTATGGGGCAGCTCTTAACGCCAGCTTACAGGCTGCGTTGGCGGAGACCACTTTGCCGCTTCTGGGTAATCCGGGCTTGATGAACAGCGCGTCAGCTATGATGGGAGCAAGTCCTCCAGTAATGATGAGCGGCAGCCCGACCGGACTCTTACAGGGAACCACGCATGAAGAACTCAACGGCACACTAGACCACCTGGACACCAATGGACACAGCAGTCCTGGATACTCCCCACACACCCACCTGCCTCCCATTCACGTCAAGGAGGAGCCACTGAACATGGAGGACGAGGACTGTCCGATGTCACTGGTGaccacagccaatcacagtcctgAACTGGATGATGACAGGGAGCTTGAGGAGGGCAACCTATCGGAGGATCTGGAATGACTATTTTGCCCCACCCCTCCGCTGGGGCTCTGCCCCTTTCAGGCCCCGCCCCTTAACTAAACCACAAACGCAGCAAAAAGACTGGACGCAGCAGGCGGGAGTATTTATTTAGCATGCATCTGGAGACTGGCCCCGAAGAAAATCTATAGCGCAGATCTTTAGGGACCACAGATGGACAGACACGAGAGAggtctgctttttaaaaacaaacatacgaAAGGAAGAACAACAAAAAGGACAAGATTTCATCCGAATCCGCTTGGCCAAATCACATAACGAACACAAGGCTCACGGAACTGAAGTGAAACGGGAGCGAGTGCGTTCTGTAGAAAGCCAGCGGCCACATATActgccaaaaaaacaaaacaaaaaaaaaaagaa
>TCONS_00055291
TTTATAAACTTTTCCACAGAGCTCTGAGCACCTTGAAGGTCCTGGGATGCATTTTGAAAACTCCTGCATTAAGATTCTCTCATACTTGGACTCGCCTCTCCCAAACAAACACGGACATCAACCGAAAGTTTCCCCTCAGGGATGAGACCTGGTATGGCCGTTGTTCACAGCGCAGCAGGAGTACTCTGAAACCAAGGCAAAAGTGGTATTAAGTCATGATGCAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTAAGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAGTGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGCAACAACAGCAGGCCCTACAAGCAGCAAGGCAATTACTCCTACAGCAACCAGGCAGTGGCCTGAAATCTCCAAAGAACAACGACAAACAGCGTCCGTTGCAGGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAAGTCCTTTCCCCCCAGCAGCTCCAAGCCCTCTTACAACAACAACAGGCAGTCATGCTTCAGCagCAACACCTGCAGGAGTTTTATAAGAAACAACAGGAACAACTTCATCTACAGCTTTTGCAGCAACAGCACCCAGGCAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCGGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGCaactgcagcagcagcagcacctgCTCAACATGCAGAGGCAGGGCCTCCTCTCTATGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACGTCCACTACCTCCACCAGCAACCCCAAAGCTTCTCCACCCATCACTCATCACAGCATGTCCAACGGCCAGTCCCCAGCCCTCAACAACAACCGGAGAGAGAGCTCATTGCATGAAGAGACCGCAGTGTCACACTCCCTCTATGGCCACGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGCGATGACTTTGGACAGTTTTTGAAGCACCTTAACAATGAACACGCACTGGATGACAGGAGTACTGCGCAGTGCCGAGTACAGATGCAGGTGGTACAACAGCTAGAGATACAGCTTTCTAAAGAACGCGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGTTGAATCTGGTCTCCAGTGTCACCATGTCAAAGAACCTCCCGTCCATCTCACCCCCAAATTTACCTCAGACGCCAACCACGCCCACTGCTCCAGTCACACCTCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGTCCCGCCAATGTGCCCAGCATGGGTGCCATGCGTAGACGCCACACCGACAAATACTCCATGGCCTTGTCCTCAGAAATCGCCCCAAACTACGAGTTTTACAAGAACGCCGACGTCAGGCCGCCGTTTACTTATGCAACCCTCATCAGGCAGGCTATCATGGAGTCAAGTGACATGCAGCTAACGCTCAACGAAATCTACAGCTGGTTCACGCGCACCTTCGCCTACTTCCGACGCAACGCCGCCACCTGGAAGAACGCAGTGCGACACAACCTCAGCCTGCACAAGTGTTTCGTCCGAGTAGAGAACGTGAAGGGCGCCGTATGGACCGTGGACGAGATGGAATACCAGAAACGCAGGTCACAGAAGATTAcaggGAGCCCGACGCTGGTCAAAAACCTGCCGTCCAGTCTGGGTTATGGGGCAGCTCTTAACGCCAGCTTACAGGCTGCGTTGGCGGAGACCACTTTGCCGCTTCTGGGTAATCCGGGCTTGATGAACAGCGCGTCAGCTATGATGGGAGCAAGTCCTCCAGTAATGATGAGCGGCAGCCCGACCGGACTCTTACAGGGAACCACGCATGAAGAACTCAACGGCACACTAGACCACCTGGACACCAATGGACACAGCAGTCCTGGATACTCCCCACACACCCACCTGCCTCCCATTCACGTCAAGGAGGAGCCACTGAACATGGAGGACGAGGACTGTCCGATGTCACTGGTGaccacagccaatcacagtcctgAACTGGATGATGACAGGGAGCTTGAGGAGGGCAACCTATCGGAGGATCTGGAATGACTATTTTGCCCCACCCCTCCGCTGGGGCTCTGCCCCTTTCAGGCCCCGCCCCTTAACTAAACCACAAACG
>TCONS_00055292
AGCAGCGTCTCTGCACTCCGAGCGGAGGAATATCAACAGCGCGTGTTGTGCGTTTGTTTTCagcgctttttaaaaacactccGACTCGTAAACACGCAAAACTTTGCATCCCCGAAGGAGATACATTGACTTCTTTTGATTCTCTCATACTTGGACTCGCCTCTCCCAAACAAACACGGACATCAACCGAAAGTTTCCCCTCAGGGATGAGACCTGGTATGGCCGTTGTTCACAGCGCAGCAGGAGTACTCTGAAACCAAGGCAAAAGTGGTATTAAGTCATGATGCAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTAAGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAGTGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGCAACAACAGCAGGCCCTACAAGCAGCAAGGCAATTACTCCTACAGCAACCAGGCAGTGGCCTGAAATCTCCAAAGAACAACGACAAACAGCGTCCGTTGCAGGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAAGTCCTTTCCCCCCAGCAGCTCCAAGCCCTCTTACAACAACAACAGGCAGTCATGCTTCAGCagCAACACCTGCAGGAGTTTTATAAGAAACAACAGGAACAACTTCATCTACAGCTTTTGCAGCAACAGCACCCAGGCAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCGGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGCaactgcagcagcagcagcacctgCTCAACATGCAGAGGCAGGGCCTCCTCTCTATGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACGTCCACTACCTCCACCAGCAACCCCAAAGCTTCTCCACCCATCACTCATCACAGCATGTCCAACGGCCAGTCCCCAGCCCTCAACAACAACCGGAGAGAGAGCTCATTGCATGAAGAGACCGCAGTGTCACACTCCCTCTATGGCCACGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGCGATGACTTTGGACAGTTTTTGAAGCACCTTAACAATGAACACGCACTGGATGACAGGAGTACTGCGCAGTGCCGAGTACAGATGCAGGTGGTACAACAGCTAGAGATACAGCTTTCTAAAGAACGCGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGTTGAATCTGGTCTCCAGTGTCACCATGTCAAAGAACCTCCCGTCCATCTCACCCCCAAATTTACCTCAGACGCCAACCACGCCCACTGCTCCAGTCACACCTCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGTCCCGCCAATGTGCCCAGCATGGGTGCCATGCGTAGACGCCACACCGACAAATACTCCATGGCCTTGTCCTCAGAAATCGCCCCAAACTACGAGTTTTACAAGAACGCCGACGTCAGGCCGCCGTTTACTTATGCAACCCTCATCAGGCAGGCTATCATGGAGTCAAGTGACATGCAGCTAACGCTCAACGAAATCTACAGCTGGTTCACGCGCACCTTCGCCTACTTCCGACGCAACGCCGCCACCTGGAAGAACGCAGTGCGACACAACCTCAGCCTGCACAAGTGTTTCGTCCGAGTAGAGAACGTGAAGGGCGCCGTATGGACCGTGGACGAGATGGAATACCAGAAACGCAGGTCACAGAAGATTAcaggGAGCCCGACGCTGGTCAAAAACCTGCCGTCCAGTCTGGGTTATGGGGCAGCTCTTAACGCCAGCTTACAGGCTGCGTTGGCGGAGACCACTTTGCCGCTTCTGGGTAATCCGGGCTTGATGAACAGCGCGTCAGCTATGATGGGAGCAAGTCCTCCAGTAATGATGAGCGGCAGCCCGACCGGACTCTTACAGGGAACCACGCATGAAGAACTCAACGGCACACTAGACCACCTGGACACCAATGGACACAGCAGTCCTGGATACTCCCCACACACCCACCTGCCTCCCATTCACGTCAAGGAGGAGCCACTGAACATGGAGGACGAGGACTGTCCGATGTCACTGGTGaccacagccaatcacagtcctgAACTGGATGATGACAGGGAGCTTGAGGAGGGCAACCTATCGGAGGATCTGGAATGACT
>TCONS_00055293
GCTCAGTGCTGTGAGGAAGACGAGCTGTTGCCATTTGCTTTTTTCCTGGAACAAACACCTGGTGCTACTGTGTTTATCGAAATGGCGCTGGATGACAATAGTTTGAAAATGGCTCTTAATTGGAGTATAGTCGGGGCGACACGAAGCGGAATAGTCATTTTATCATCCAAGGGATTATATGATGATTTGATTCTGCACGCAGAGGCTCGTTTATGAATGCATAATCATGTGCAGATGAGTTCCCGGTTGCTTTGTACTTTCGGATACTACAGAAACGAAACGAGGGATGAGCGTCCGGGTCGATCTCACGCCGGTTTACCTCCAGATGCTTAAGTGTGATGCTCAAGTTTCACAGCAGAGCAGAGCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACGTCCACTACCTCCACCAGCAACCCCAAAGCTTCTCCACCCATCACTCATCACAGCATGTCCAACGGCCAGTCCCCAGCCCTCAACAACAACCGGAGAGAGAGCTCATTGCATGAAGAGACCGCAGTGTCACACTCCCTCTATGGCCACGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGCGATGACTTTGGACAGTTTTTGAAGCACCTTAACAATGAACACGCACTGGATGACAGGAGTACTGCGCAGTGCCGAGTACAGATGCAGGTGGTACAACAGCTAGAGATACAGCTTTCTAAAGAACGCGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGTTGAATCTGGTCTCCAGTGTCACCATGTCAAAGAACCTCCCGTCCATCTCACCCCCAAATTTACCTCAGACGCCAACCACGCCCACTGCTCCAGTCACACCTCTTTCCCAGATGCCC
>TCONS_00055294
AGGAGAGCGATCCAACAGACTCCCTATTACCTGCGACATCACAAAGCTTTCAAGAGAGAGAAGAGGAGGGGGGCCGATGtggaGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAAGTCCTTTCCCCCCAGCAGCTCCAAGCCCTCTTACAACAACAACAGGCAGTCATGCTTCAGCagCAACACCTGCAGGAGTTTTATAAGAAACAACAGGAACAACTTCATCTACAGCTTTTGCAGCAACAGCACCCAGGCAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCGGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGCaactgcagcagcagcagcacctgCTCAACATGCAGAGGCAGGGCCTCCTCTCTATGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACG
>TCONS_00055295
AAACACGCAAAACTTTGCATCCCCGAAGGAGATACATTGACTTCTTTTGCTTTAGAGCTGCTCGCATGCAGGAGCAGTGAGTGTCAGGACAGGAAGGCTGATGTATTGGAGTGTTAATGGACAGCTCTCCTCTTAAGCCTCAGCCACATCTACTGCCAGTGCACTTTCAGTGGCTTCAAGGGATGTGGGACTAAATCAATAGGGAGCACCTCAGTTTCACTCCGGCAGCTGTGCAGGTGAAGTGCAGGTGTGCATCATGCTGCTTCATCACTCAACGCCGTGGCTCTTCAAAGAGGCCGCGATAGCAGTAGTAAAAATTTTCACACACACGCGAACACACTTTGCTCTGTAACGTGAAGCCCGGCCCTTTGTTAGCCCCACGCAGTTCTTCCCAGGTGATTTTAATTAGCACTGTTTCAACGAGCAGTGTTTGGAGCGTGATGTTTCACGTACGACACACTGAGGGAGGGAAGGAGGGAGGCACGGCTGACCTGCGACAGGAAAGAGGGGCCTAATTTCCAAGTATCCCAATGTTTTTTTGTAGTCGCAGCCTGATTACGGCATTCATCATGG

Function

symbol description
foxp2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041203-2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

Ensembl:

ensembl_id ENSDARG00000005453

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055290 False 2725 mRNA 0.53 18 6423041 6567503
TCONS_00055291 False 2379 mRNA 0.54 19 6423352 6623645
TCONS_00055292 False 2376 mRNA 0.54 19 6423420 6567355
TCONS_00055293 False 979 processed_transcript 0.51 6 6436764 6451732
TCONS_00055294 False 602 mRNA 0.55 5 6451156 6459863
TCONS_00055295 True 573 processed_transcript 0.50 3 6565653 6567266

Neighbor

gene id symbol gene type direction distance location
XLOC_028489 MDFIC coding downstream 6627 6339572 ~ 6416414 (-)
XLOC_028488 NA coding downstream 170558 6177586 ~ 6252483 (-)
XLOC_028487 NA coding downstream 306371 6113441 ~ 6116670 (-)
XLOC_028486 arl1 coding downstream 509703 5906958 ~ 5913338 (-)
XLOC_028485 slc5a8 coding downstream 559135 5850225 ~ 5863906 (-)
XLOC_028492 ifrd1 coding upstream 176149 6799794 ~ 6809323 (-)
XLOC_028493 NA coding upstream 396805 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 coding upstream 561550 7185195 ~ 7185311 (-)
XLOC_028495 lrrn3b coding upstream 587110 7210755 ~ 7212875 (-)
XLOC_028496 CR354372.1 coding upstream 598435 7222080 ~ 7222367 (-)
XLOC_028478 NA non-coding downstream 677156 5693170 ~ 5745885 (-)
XLOC_028498 NA non-coding upstream 914370 7538015 ~ 7546117 (-)
XLOC_028499 NA non-coding upstream 933769 7557414 ~ 7566507 (-)

Expression


Co-expression Network