XLOC_028491


Basic Information

Item Value
gene id XLOC_028491
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6576777 ~ 6580547 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058043
CATTGAAAGACTGATTGCTTGGGATCAAATAGGACTTTTAATGAGAATACAAGTGAAAGCAACAAAAACAGAAATGCCTCTTAAATCTATTTTCCAAGTTATTTTGGGCCCATAGAATCACGTCATGccactttacattttaaaaccataCATCATAtttgtgaaaaaagttttttttttaaaaacatcctaCAGTATATTGTCTCAGTCCACATCAACAGACGCCCCATCCAGACGCTGTTTCATGCCCTGGCTGCACCACCAGCACAGAGAAAACAAATAGAGAGCCAAGCAGGTTGGCATGTCACAAAGATATGTTGTTATGAAGATCACAAACAGAATAGCATACAGTAAAGCCTTGGCCATGTGACCCAGTGAGTTGAACTCCTGCCACCATGAAAACAGCCTGTTGCTACTACCATTGAGGCTTTTCccaagctcaaactcttcatctTGAGAATTGACCTCTCTGTCCTTTATAGATGTTGTCTGAGGGATGTGTTTGGGAAGGTCAGTGCTATCTGTCAGATATGTAACTTTGCTGGTAAGGTCTTCATCTGTGCAATTATCACCGATGGCTCGGGAGTCCTCAATGAGCTCTCGTTTGCTTTCTGAACACATTTCATCCTCTTCACCTCCTTTAGCTGCTTCAATAGTCGTCTCGTTGAGTTGCTCCTTTATTTTAAGTCCTTCATTTGCCTCAAACCGCCTCTCTTCGCTTTTCTGTAGCTCTGAATTGTCTTTGTGAAGATTCTTGTTCATCGTGCATAATTCGTTCTCATTAAACGCCTCGCTCGCGCACGATGAAACACTCTGTATTTCTGCACTGTGATCCATAGTTGTTTCATCTTGTCCTTTTCTACTGCTTTCCGCGTCCTCTTCATGTAGTTCTGTATAAAACCACCTCATTTCCACCTGCTCCTCGCTATCGTCTATATTTATAACCTTCCTCTTTGGAGAAGATCCCTCGGCCTGTCTATTTGTGAGTGGCACGTCTCTGATCCCCGTAAATGTCAGGATGTCTTTGACCGccctgtgtgtgttttctttaacCTTTGAGGTGTCGGAGCTGCCCGTGCATTCTTCAGGTGAGATTCCATCTCCTGCTTCTGAATTCTgagtctctgtgtcatgcgcgaTTCCAGTTTCATCCCCTGGGCTCGCCTTGGTCGTGTCTTGACTCAAAAATCCACTTGTGAGCTCATGATGTGGCGTTTGGCAGTCACGAGATGCCTCTAACTCTCTTTCCAGCCTGTCTGGCTCTGATCCCAGAACAGAGCATGGTACTGTAGTGACCCTTGGTTCTTTAACTAACTGGTAATCTACAACTCGATCACTAGAAAGACCTGTGCTCAGATCCTTTCCTTGCTCTGTGGGATCAGATTTTATGGTTTCTATTGCTCCTCTGTCATCAGTCCCTTGACTATAATCTTTCTCCGCTCCTCTATCTTCCATTGGGACTACAATTTGGTCCCTTGAATCTAAAACAGACCATGGTAGAGTAGTGACCATTGGTTCTTTTACTAACTGGTAATTCACAACTTGATCACTAGAAAGACTTGTGATCGGATCCTTTCCTTGTTGTGTGGCATCAGATTGGATGATATTTGTTGTTCTCCTCTTAGCAGACTCTTGACTGTAATTTTTCCAAGCTTCTCTGTCCTCCAATCCTCCGACTCTGTCCCTTGAAGCTGAAACTTCAGAATGGTCAAGTGACTCTGGAGAAGCACATGCCTGATCCTGCATATCACTGTGAGGGATTGCCGTATCAGAGCCCTTCAGAAAGGCATCAAAACTCAACTCAGCTTGGTGATCTTCAACTTGCTGGCTCTCTGTGTTTGGGGGGTTCACTTGGGGAGGTGTTGTTGAGGTACTCCCCCAGTCTAGAGAAAGCAAAGGAATCTGGTGGTACATTAGTATTGGTGGTGTGTCCATGCCGAATCCCTGTTGGTTGTCGGTTCTGCTTTGTATACTCAGCCTTGGGATGGAGGTTGAACTTTCATCTGTGATGGAATTACATCCCATCTGGGTTTCTGTTGCTTTCTGAGCAAAGTAGCTTTGAACATGTGCCAGACGAGCAGCTTGACGCTTCCTACGACGGTCCACCTGTCAGAAATGCGACAATATGctgaataaatatgtttttaaaagaaattgaTCATGTTTTGT
>TCONS_00058044
GTGTTGTCTTTGACACCATAAGGGTTTCTGTTGTTCTATCATTTTATTATATCACAAAATGGGATTAACATTTGGTATAATAATACCAGAGTTAGTTTAGCATTGCATTGAAAGACTGATTGCTTGGGATCAAATAGGACTTTTAATGAGAATACAAGTGAAAGCAACAAAAACAGAAATGCCTCTTAAATCTATTTTCCAAGTTATTTTGGGCCCATAGAATCACGTCATGccactttacattttaaaaccataCATCATAtttgtgaaaaaagttttttttttaaaaacatcctaCAGTATATTGTCTCAGTCCACATCAACAGACGCCCCATCCAGACGCTGTTTCATGCCCTGGCTGCACCACCAGCACAGAGAAAACAAATAGAGAGCCAAGCAGGTTGGCATGTCACAAAGATATGTTGTTATGAAGATCACAAACAGAATAGCATACAGTAAAGCCTTGGCCATGTGACCCAGTGAGTTGAACTCCTGCCACCATGAAAACAGCCTGTTGCTACTACCATTGAGGCTTTTCccaagctcaaactcttcatctTGAGAATTGACCTCTCTGTCCTTTATAGATGTTGTCTGAGGGATGTGTTTGGGAAGGTCAGTGCTATCTGTCAGATATGTAACTTTGCTGGTAAGGTCTTCATCTGTGCAATTATCACCGATGGCTCGGGAGTCCTCAATGAGCTCTCGTTTGCTTTCTGAACACATTTCATCCTCTTCACCTCCTTTAGCTGCTTCAATAGTCGTCTCGTTGAGTTGCTCCTTTATTTTAAGTCCTTCATTTGCCTCAAACCGCCTCTCTTCGCTTTTCTGTAGCTCTGAATTGTCTTTGTGAAGATTCTTGTTCATCGTGCATAATTCGTTCTCATTAAACGCCTCGCTCGCGCACGATGAAACACTCTGTATTTCTGCACTGTGATCCATAGTTGTTTCATCTTGTCCTTTTCTACTGCTTTCCGCGTCCTCTTCATGTAGTTCTGTATAAAACCACCTCATTTCCACCTGCTCCTCGCTATCGTCTATATTTATAACCTTCCTCTTTGGAGAAGATCCCTCGGCCTGTCTATTTGTGAGTGGCACGTCTCTGATCCCCGTAAATGTCAGGATGTCTTTGACCGccctgtgtgtgttttctttaacCTTTGAGGTGTCGGAGCTGCCCGTGCATTCTTCAGGTGAGATTCCATCTCCTGCTTCTGAATTCTgagtctctgtgtcatgcgcgaTTCCAGTTTCATCCCCTGGGCTCGCCTTGGTCGTGTCTTGACTCAAAAATCCACTTGTGAGCTCATGATGTGGCGTTTGGCAGTCACGAGATGCCTCTAACTCTCTTTCCAGCCTGTCTGGCTCTGATCCCAGAACAGAGCATGGTACTGTAGTGACCCTTGGTTCTTTAACTAACTGGTAATCTACAACTCGATCACTAGAAAGACCTGTGCTCAGATCCTTTCCTTGCTCTGTGGGATCAGATGTTATGATTTCTATTGCTCCCCTGTCAGCAGACCATTGACTACATTTTTTCTCAGCTTCTCTATCCTCCATTGGGACTTCAATTTGTTCCCTTGAAGCTAAAACTGAGCATGGTACGATAGTGACGCTTGGTTCTTTTACTAACTGATGATCCACAACTTCATAACTCGAAAGACTCAAGCTCAGATCCTTTCTTTGGTCTGTGGGATCAGATTTTATACTTTCTATTGCTCTCTTGTCATCAGACCATTGACTATTATCTTTCTTAGCTCCTCTATCCTCTATTGGGATCATATTTTTGTCCCTTGAAGCTAAAACAGAGCAGGGTATGGCAGTGACACTTGGTTCTTTCGCTAACTGGTAATCCTCAACAACTTGATCACTCGAAAGACCTGTGCTCAGATTCTTTCCTTGCTCCGTGGGATCAGATTTTATGGTTTCTATTGCTCTCCTGTCAGCAGACCCTTGAATGTAGCCTTTTTCAGCTTCTCTATCCTCCATCGGGACTACAATTTGGTCCCTTGAAGGTAAAACAGAGCAGGGTACGGTAGTGATGCTTGGTTCTTTTGCTAACTGATAATCCACAACTTGATCACTAGAGAGACTCGTACTCAGATCTTTTACTTGCACTGTGGGGTCAGATTTTATGGTTTCTATTGCTCCTCTGTCATCAGTCCCTTGACTATAATCTTTCTCCGCTCCTCTATCTTCCATTGGGACTACAATTTGGTCCCTTGAATCTAAAACAGACCATGGTAGAGTAGTGACCATTGGTTCTTTTACTAACTGGTAATTCACAACTTGATCACTAGAAAGACTTGTGATCGGATCCTTTCCTTGTTGTGTGGCATCAGATTGGATGATATTTGTTGTTCTCCTCTTAGCAGACTCTTGACTGTAATTTTTCCAAGCTTCTCTGTCCTCCAATCCTCCGACTCTGTCCCTTGAAGCTGAAACTTCAGAATGGTCAAGTGACTCTGGAGAAGCACATGCCTGATCCTGCATATCACTGTGAGGGATTGCCGTATCAGAGCCCTTCAGAAAGGCATCAAAACTCAACTCAGCTTGGTGATCTTCAACTTGCTGGCTCTCTGTGTTTGGGGGGTTCACTTGGGGAGGTGTTGTTGAGGTACTCCCCCAGTCTAGAGAAAGCAAAGGAATCTGGTGGTACATTAGTATTGGTGGTGTGTCCATGCCGAATCCCTGTTGGTTGTCGGTTCTGCTTTGTATACTCAGCCTTGGGATGGAGGTTGAACTTTCATCTGTGATGGAATTACATCCCATCTGGGTTTCTGTTGCTTTCTGAGCAAAGTAGCTTTGAACATGTGCCAGACGAGCAGCTTGACGCTTCCTACGACGGTCCACCTGTCAGAAATGCGACAATATGctgaataaatatgtttttaaaagaaattgaTCATGTTTTGT
>TCONS_00058045
ttttaaaaacatcctaCAGTATATTGTCTCAGTCCACATCAACAGACGCCCCATCCAGACGCTGTTTCATGCCCTGGCTGCACCACCAGCACAGAGAAAACAAATAGAGAGCCAAGCAGGTTGGCATGTCACAAAGATATGTTGTTATGAAGATCACAAACAGAATAGCATACAGTAAAGCCTTGGCCATGTGACCCAGTGAGTTGAACTCCTGCCACCATGAAAACAGCCTGTTGCTACTACCATTGAGGCTTTTCccaagctcaaactcttcatctTGAGAATTGACCTCTCTGTCCTTTATAGATGTTGTCTGAGGGATGTGTTTGGGAAGGTCAGTGCTATCTGTCAGATATGTAACTTTGCTGGTAAGGTCTTCATCTGTGCAATTATCACCGATGGCTCGGGAGTCCTCAATGAGCTCTCGTTTGCTTTCTGAACACATTTCATCCTCTTCACCTCCTTTAGCTGCTTCAATAGTCGTCTCGTTGAGTTGCTCCTTTATTTTAAGTCCTTCATTTGCCTCAAACCGCCTCTCTTCGCTTTTCTGTAGCTCTGAATTGTCTTTGTGAAGATTCTTGTTCATCGTGCATAATTCGTTCTCATTAAACGCCTCGCTCGCGCACGATGAAACACTCTGTATTTCTGCACTGTGATCCATAGTTGTTTCATCTTGTCCTTTTCTACTGCTTTCCGCGTCCTCTTCATGTAGTTCTGTATAAAACCACCTCATTTCCACCTGCTCCTCGCTATCGTCTATATTTATAACCTTCCTCTTTGGAGAAGATCCCTCGGCCTGTCTATTTGTGAGTGGCACGTCTCTGATCCCCGTAAATGTCAGGATGTCTTTGACCGccctgtgtgtgttttctttaacCTTTGAGGTGTCGGAGCTGCCCGTGCATTCTTCAGGTGAGATTCCATCTCCTGCTTCTGAATTCTgagtctctgtgtcatgcgcgaTTCCAGTTTCATCCCCTGGGCTCGCCTTGGTCGTGTCTTGACTCAAAAATCCACTTGTGAGCTCATGATGTGGCGTTTGGCAGTCACGAGATGCCTCTAACTCTCTTTCCAGCCTGTCTGGCTCTGATCCCAGAACAGAGCATGGTACTGTAGTGACCCTTGGTTCTTTAACTAACTGGTAATCTACAACTCGATCACTAGAAAGACCTGTGCTCAGATCCTTTCCTTGCTCTGTGGGATCAGATTTTATGGTTTCTATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058043 False 2169 lncRNA 0.44 3 6576777 6580442
TCONS_00058044 False 2916 lncRNA 0.43 2 6576777 6580547
TCONS_00058045 True 1223 lncRNA 0.45 2 6578618 6580266

Neighbor

gene id symbol gene type direction distance location
XLOC_028489 MDFIC coding downstream 160363 6339572 ~ 6416414 (-)
XLOC_028488 NA coding downstream 324294 6177586 ~ 6252483 (-)
XLOC_028487 NA coding downstream 460107 6113441 ~ 6116670 (-)
XLOC_028486 arl1 coding downstream 663439 5906958 ~ 5913338 (-)
XLOC_028485 slc5a8 coding downstream 712871 5850225 ~ 5863906 (-)
XLOC_028492 ifrd1 coding upstream 219247 6799794 ~ 6809323 (-)
XLOC_028493 NA coding upstream 439903 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 coding upstream 604648 7185195 ~ 7185311 (-)
XLOC_028495 lrrn3b coding upstream 630208 7210755 ~ 7212875 (-)
XLOC_028496 CR354372.1 coding upstream 641533 7222080 ~ 7222367 (-)
XLOC_028478 NA non-coding downstream 830892 5693170 ~ 5745885 (-)
XLOC_028498 NA non-coding upstream 957468 7538015 ~ 7546117 (-)
XLOC_028499 NA non-coding upstream 976867 7557414 ~ 7566507 (-)
XLOC_028480 NA non-coding downstream 836839 5739010 ~ 5739938 (-)
XLOC_028479 NA non-coding downstream 839432 5735370 ~ 5737345 (-)

Expression


Co-expression Network