XLOC_028492 (ifrd1)


Basic Information

Item Value
gene id XLOC_028492
gene name ifrd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6799794 ~ 6809323 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055296
GCGCTTCGCGGTAGCGCGCAGACACAGCCCTAGTTTGTGAGGGAAAATGTATCGCTCGCGCTCCAAGTCTAACACCGGAATCGCTTTTAATACTTTCCTTTTCACTGTGCCACTGGAATATACTCAAACGAAAAGACATTATAGTAAAAACTGGTCGTgtattggttgattttaggtgcGGATCTACTCATTTAAGCAAGATGCCACGGGCCAAGAAAAGGAGCGGCAAAGgTGGACAACAGGGAAATGTCCAACCGTTCAGTGATGAAGACGCATCAATCGAGACGCTCAGTCACTGCAGCAGCCTCAGTGAAAGAACCAGTGCTGCAGAGGAAGCTGGTGAAACTGAAGAGATGGCTGAAGAGGACTTCCAGTACAAGCTGAAGGTGTACATCGACAGCACGGTGGATAAAAGTGCCAAGACCAGACAAGGTGCCCTTGATGGACTAAAGACTgccatggcaaccaaaatcctcTACGACTTCATTTCCGAGAGAAGGATGACCATCACGGACGGCATTGAACGCTGCTTGAAGAAAGGTAAAGGAGTGGAGCAGAGTGCCGCAGCCTCGCTGGCGTGTCTCCTGTGCATTCAGCTGGGTTCGGGGATTGAGAGCGAAGAAGTTTTTAAGAGCCTTAAACCTGTATTCAAGACCATCCTCAATGATGGAACGGCTAACATTCAAGCCAGACAAGCTTGCGCGACAAGTCTAGGCCTCTGCACTCTTGTAGCAGAAGATGATATCATGGATGTGTACGCCACCATGGAGTGCTTTGAGAGCCTGTTCACCCGCTCGTACATCCGGGAAGACGGAAGCAGACCTTCAGTGAGTCCTCCAGTCACGCAGCTCCACACCAACGCGCTCTTATCGTGGGCTCTGCTTCTCACCATCTGCACCGGCAGCCACATCAGAGCCATCGCGCAGAAacATCTGGCTAAACTTCCACGTCTGCTGGAGAATGACGATGTCAACATGAGGATTGCTGCTGGAGAGACCATCGCCCTCCTGTTTGAACTCATTAGAGATGTTGAGCCTGAGTTTGATTTGGATGAGTGGGAGCCGCTGTGTGAGAAGCTGAATGCTTTAGCCACAGACTGCAACAAACACCGAGCCAAAACGGATAAGAGGAAGCAGAGATCTGTTTTCAGAGACGTCCTGAAGGCTGTAGAGGATGGAGATTTCCAAAGTGAAACAATCCGATTTGGCACAGAGCGAATGCTCATCGACAGCTGGGTCAGAAAGAGAACTTATGACGCCTTCAGAGAGTTCGTCGGCTCTGGGATGAACTACCATCTACAGGCAAACGAGTTCATAAGAGACGTGTTTGAACTGGGACCACCAATGTTGATCGATTCAGCCACTCTCAAAGCCATGAAGAGCTCCAGACTGGAGAGACACCTCTACAATGCAGCTGCGTTTAAAGCTCGAACCAAGGCGAGGAACAAATGCCGGGACAAAAGAGTGGATGTTGGAGAGTTTTAGGAAGTTTTGTAAAGCACATGAATTCTTTCTTCTATTTATTCTTTGCATTCCGgtcatttttataaatacaaacacatttctattaatatatatgttaatatttgCTATTGATTAACTCACTAATTCCTCATCGATCCTAATGTATGTCTGTATTTAAGTGGTGTTGGTGTGGAGTCAATTTTCCTTCTATTGTAGTTTGTGTATTTGTAGGTCTGTAATGTAATGAGTGGGAAAGTATTTATGACTTCTGTGTTTCGGGTGGTACTGTAGTAGTGGCAAGGCTGTACAAAATGAttcaaaaaagttaataaaattagATTGATTGCCCCTATTCTGaa
>TCONS_00055297
CTTTTGCAAATGGATCGCattaccaaaaatgattgaggtcatatCCAAATATCACATAAGTCAATAGTATTATTGCAGCACGCCTAACTGGCTCATTTTCAGCATTGATCTGAATCTGTTCCAGTCTTGTACTGCAGCTTGGCAAGAAAGTTGTTATCGAAGTGTGAAActgctttttgtttttgcaggTGGACAACAGGGAAATGTCCAACCGTTCAGTGATGAAGACGCATCAATCGAGACGCTCAGTCACTGCAGCAGCCTCAGTGAAAGAACCAGTGCTGCAGAGGAAGCTGGTGAAACTGAAGAGATGGCTGAAGAGGACTTCCAGTACAAGCTGAAGGTGTACATCGACAGCACGGTGGATAAAAGTGCCAAGACCAGACAAGGTGCCCTTGATGGACTAAAGACTgccatggcaaccaaaatcctcTACGACTTCATTTCCGAGAGAAGGATGACCATCACGGACGGCATTGAACGCTGCTTGAAGAAAG
>TCONS_00055298
ATCACTATATTGTCTtcactgtataaataatttaataatatttgaaatCCATCTCAATTAGGATTCAATAAAATTATATCTGTCTGAATGCTTTGAACTCCTTTTCCACTATCAACCAAGACTGCGTGTTATGGAGTATAATTTTAccagatttaattatttatgtagaaAGATTTAATCATTTTAGATGCATTCGGATGATTCTATTGGATGCAGTTATTGAGTTtggattaaatataataaaccagTCACaagcattaataaatacaaaatataaaaccgCACCGCATACTTCacatttattaaagttacaaatatgTCTTATTCCTGAATGCTTTAAAGTCACCTTAAATGCTCACCCAGTCACACTCAAAGTTACGTTTTGGTAACATTTATGGTTGATTTTTACAATGACTTAAATCAAGAGTGTTTTGAAAGCTATACGAGTTTAATCCCTGTTCAACATTTTAGATTCTGCATTGTAATTATTGGATGAGCACAtggtgatattgatgctgaaacgatgtattGAGCAGCTCTATATTTTCTAAGATAAATTCTACATGTCTGATTTCTCCATCTGTATTTGACAGCTGGTGAAACTGAAGAGATGGCTGAAGAGGACTTCCAGTACAAGCTGAAGGTGTACATCGACAGCACGGTGGATAAAAGTGCCAAGACCAGACAAGGTGCCCTTGATGGACTAAAGACTgccatggcaaccaaaatcctcTACG

Function

symbol description
ifrd1 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6132 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

Ensembl:

ensembl_id ENSDARG00000068708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055296 False 1822 mRNA 0.46 12 6799794 6809323
TCONS_00055297 False 497 mRNA 0.45 3 6805038 6806632
TCONS_00055298 True 737 lncRNA 0.34 2 6805098 6805921

Neighbor

gene id symbol gene type direction distance location
XLOC_028490 foxp2 coding downstream 176149 6423041 ~ 6623645 (-)
XLOC_028491 NA coding downstream 219247 6576777 ~ 6580547 (-)
XLOC_028489 MDFIC coding downstream 383380 6339572 ~ 6416414 (-)
XLOC_028488 NA coding downstream 547311 6177586 ~ 6252483 (-)
XLOC_028487 NA coding downstream 683124 6113441 ~ 6116670 (-)
XLOC_028493 NA coding upstream 211127 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 coding upstream 375872 7185195 ~ 7185311 (-)
XLOC_028495 lrrn3b coding upstream 401432 7210755 ~ 7212875 (-)
XLOC_028496 CR354372.1 coding upstream 412757 7222080 ~ 7222367 (-)
XLOC_028497 si:ch211-170p16.1 coding upstream 419913 7229236 ~ 7231480 (-)
XLOC_028478 NA non-coding downstream 1053909 5693170 ~ 5745885 (-)
XLOC_028498 NA non-coding upstream 728692 7538015 ~ 7546117 (-)
XLOC_028499 NA non-coding upstream 748091 7557414 ~ 7566507 (-)

Expression


Co-expression Network