G933533


Basic Information

Item Value
gene id G933533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 544579 ~ 567355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1064303
aaatatcAAGGTTTTGTGGAGAAAAACAAAATGCTATATTATGCAAAAAGCCTGAGGTACATATCCCATCCTACGCTGTTCTACAGCCAGCCTATAGCTAGCCTCCTATTGGagaggggtattcaactcttaccctaccagttccagagcctgctggtttacTGTTCTACGGGATAATTGCACACACCtcatgtcccaggtctaaatcagtccctgatttagaggggaacaatgaaaaaaggCAATGCATCTGGCTTGGAGGTCCTGAGTTGAGTTTGATGGGTGTAGGAGTTATGCATGATGCTCCCATTCATACTGTCTATATGTTTTCTGATTGTTCTATACGTTGAACAGTGAACATGTATTCTTCTGTTATCTGCCTTAATTTGCTGACTTTTATAAATCCACCTGATGGGGTTTTCAATGGGTGGAGATCACCTGATAGGGTTTTATATTGCCACCAACAGGACACCTGATGGGGTTTTATATTACCACCAATAGGACACCTGATGGGGTTTTATATTGCCACCAAGAGGACACCTGATGGGGTTTTATATTGCCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1064303 True 562 lncRNA 0.43 2 544579 567355

Neighbor

gene id symbol gene type direction distance location
LOC110535152 LOC106590691 coding upstream 2226 485692 ~ 542353 (+)
slc22a13b NA coding upstream 106049 392112 ~ 438530 (+)
cry-dash LOC106579757 coding upstream 166216 340641 ~ 378363 (+)
dlec1 dlec1 coding upstream 236739 193352 ~ 307840 (+)
gars1 gars coding upstream 456228 63442 ~ 88351 (+)
LOC110536523 LOC106563098 coding downstream 8285 575640 ~ 604339 (+)
LOC110535151 LOC106579763 coding downstream 64768 632123 ~ 646961 (+)
LOC110535150 LOC106590688 coding downstream 175137 742492 ~ 859531 (+)
fam162a e2ig5 coding downstream 785634 1352989 ~ 1364272 (+)
nktr nktr coding downstream 822018 1389373 ~ 1479628 (+)
G933552 NA non-coding upstream 20961 518896 ~ 523618 (+)
G933545 NA non-coding upstream 32806 508049 ~ 511773 (+)
G933524 NA non-coding upstream 66644 477594 ~ 477935 (+)
G933522 NA non-coding upstream 71037 473316 ~ 473542 (+)
G933520 NA non-coding upstream 72797 471549 ~ 471782 (+)
G933583 NA non-coding downstream 14163 581518 ~ 595816 (+)
G933585 NA non-coding downstream 17038 584393 ~ 589797 (+)
G933586 NA non-coding downstream 37323 604678 ~ 608464 (+)
G933576 NA non-coding downstream 43102 610457 ~ 611537 (+)
G933679 NA other downstream 157832 725187 ~ 728205 (+)
G933799 NA other downstream 382176 949531 ~ 951584 (+)
G934169 NA other downstream 740172 1307527 ~ 1307759 (+)
G934256 NA other downstream 920721 1488076 ~ 1496014 (+)

Expression


Co-expression Network