XLOC_028498


Basic Information

Item Value
gene id XLOC_028498
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7538015 ~ 7546117 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058047
ATTTCACCCAACAGAAATTCTCTTTAAGCTTAAAGTTACTTACCGGTGGTGCTTGACAGCTGCATTGTCTTTGCATCCACTGCATGTTATGAGTGATTTTGATAGCTGTCATTTGCAGGAACTGTATTAAAAACAATCTGCACGTGTTGTTGCGTCTGTCATCGAGccccatgttgttgttgttgttgttgttgttgtcattgaaACCCTCTTCCCCCGTCTAGTGGAGCGGAGACAAAACTGAGCCTGTTTGCTGCCCTCCTGTGTTGAATTATTTGAATTACACTGCCGATGTTTTTCCATTGACTGATATGGAGGATCTTTTCAGATCGCCATCATGTGACCTGATTGAAAGCAGGGGAAAGTGACCAGTGTGGCTCAGGGTACTTACCTCTGGTGGTCTCGGACTCGAGCCAGAAGCTGAGTGATCTGTAAAGGGACACATACGGAAGCCTTGCTAAGCACAAATATCAATATGAGCAGGACGGGGGGAAACCTGAGGGGCGCAGACGTCCATCGCCTGATTTACAGTCTCCTGCTTCAGCTGCAGGCGTCCAGAGCCCAGACCCGACACAAATCTGACCAACAACAGGTACTGACAGCAAGGCTACACAACAGTTACTTACAACTTCTGTTGTTCATTGATTCGGGTCTGGAGAACATTCATCTGGAAGCAAGTCACAGTTTTAGACAGGCAGGCCATGGACCAGGCCTGTTTTCAGTGGGAATTATTCTATGGGCTCAATATGAAACT
>TCONS_00058048
GACCAGTGTTGCTCATTTCACCCAACAGAAATTCTCTTTAAGCTTAAAGTTACTTACCGGTGGTGCTTGACAGCTGCATTGTCTTTGCATCCACTGCATGTTATGAGTGATTTTGATAGCTGTCATTTGCAGGAACTGTATTAAAAACAATCTGCACGTGTTGTTGCGTCTGTCATCGAGccccatgttgttgttgttgttgttgttgttgtcattgaaACCCTCTTCCCCCGTCTAGTGGAGCGGAGACAAAACTGAGCCTGTTTGCTGCCCTCCTGTGTTGAATTATTTGAATTACACTGCCGATGTTTTTCCATTGACTGATATGGAGGATCTTTTCAGATCGCCATCATGTGCCAGACCTGATTGAAAGCAGGGGAAAGTGACCAGTGTGGCTCAGGGTACTTACCTCTGGTGGTCTCGGACTCGAGCCAGAAGCTGAGTGATCTGTAAAGGGACACATACGGAAGCCTTGCTAAGCACAAATATCAATATGAGCAGGACGGGGGGAAACCTGAGGGGCGCAGACGTCCATCGCCTGATTTACAGTCTCCTGCTTCAGCTGCAGGCGTCCAGAGCCCAGACCCGACACAAATCTGACCAACAACAGGTACTGACAGCAAGGCTACACAACAGTTACTTACAACTTCTGTTGTTCATTGATTCGGGTCTGGAGAACATTCATCTGGAAGCAAGTCACAGTTTTAGACAGGCAGGCCATGGACCAGGCCTGTTTTCAGTGGGAATTATTCTATGGGCTCAATATGAAACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058047 False 754 lncRNA 0.47 2 7538015 7546103
TCONS_00058048 True 772 lncRNA 0.47 2 7538015 7546117

Neighbor

gene id symbol gene type direction distance location
XLOC_028497 si:ch211-170p16.1 coding downstream 306535 7229236 ~ 7231480 (-)
XLOC_028496 CR354372.1 coding downstream 315648 7222080 ~ 7222367 (-)
XLOC_028495 lrrn3b coding downstream 325140 7210755 ~ 7212875 (-)
XLOC_028494 FO681358.2 coding downstream 352704 7185195 ~ 7185311 (-)
XLOC_028493 NA coding downstream 513718 7020450 ~ 7024297 (-)
XLOC_028499 NA coding upstream 11297 7557414 ~ 7566507 (-)
XLOC_028500 NA coding upstream 32744 7578861 ~ 7581433 (-)
XLOC_028501 NA coding upstream 52093 7598210 ~ 7653189 (-)
XLOC_028502 NA coding upstream 98984 7645101 ~ 7648229 (-)
XLOC_028503 lta4h coding upstream 107490 7653607 ~ 7673165 (-)
XLOC_028491 NA non-coding downstream 957468 6576777 ~ 6580547 (-)
XLOC_028488 NA non-coding downstream 1285532 6177586 ~ 6252483 (-)
XLOC_028504 BX649411.3 non-coding upstream 133862 7679979 ~ 7680095 (-)

Expression


Co-expression Network