XLOC_002850 (hist2h2l)


Basic Information

Item Value
gene id XLOC_002850
gene name hist2h2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29815644 ~ 29816467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005279
CCGTGACAGCTGAGCTGAGCTTTCGTGATAAATCGACACGATGCCCGAACCTGCGAAGTCAGCGCCCGCTCCCAAAAAAGGCTCTAAAAAAGCTGTCACCAAGACCCAGAAGAAGGGGGATAAGAAAAGGCGTAAGACCAGGAAAGAGAGTTACGCCATTTACGTGTACAAAGTACTAAAACAAGTCCACCCGGACACTGGCATCTCCTCAAAGGCGATGGGCATTATGAACTCATTTGTAAACGACATCTTCGAGCGCATCGCCGGAGAAGCGTCGCGCCTGGCGCATTACAACAAGCGCTCCACTATCACATCCCGGGAGATCCAGACAGCCGTGCGCCTGCTCCTGCCCGGAGAACTGGCCAAACACGCAGTGTCTGAGGGAACAAAGGCCGTGACCAAATACACCAGCTCCAAGTGAAAGTGAGCGGCAGACGGACTGGACTGTATTCTTATGGATGGCAGATGAAAACCGTCCGCATGAAGGACCTCTGGTACATCTTGAGCTCTGGAGGAGCACATACACACGGTGCTTTCCATCTGTAACACAACATTCACCTGAGGTTGTTCCTGTTTGATCGTATTTGCACGTGTGATGAACACTTGTTATGTACTATTCTGGCATATGCCCGTCATTTGTTTACCCATGTGGCTGTAAAGTCAAATTCCTGGAGGAAATCACTGTGGCTTTGGTTTTTATTGATTCTTGTTGACAAAAAATTGCTGTACTGTATTCATATCGAAGAAAATGTCTTAAGCCTAAATGTTTCTTCATACATTACCTTGGTATTATTTACCCCAAATAAATACACTGGTTAATTGTA

Function

symbol description
hist2h2l Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Located in chromatin. Is expressed in gill; heart; muscle; pleuroperitoneal region; and proliferative region. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-36 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Located in chromatin. Is expressed in gill; heart; muscle; pleuroperitoneal region; and proliferative region. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).

Ensembl:

ensembl_id ENSDARG00000068996

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005279 True 824 mRNA 0.47 1 29815644 29816467

Neighbor

gene id symbol gene type direction distance location
XLOC_002849 si:ch73-261i21.5 coding downstream 6539 29793817 ~ 29809105 (-)
XLOC_002848 vps11 coding downstream 47088 29751029 ~ 29768556 (-)
XLOC_002847 ift46 coding downstream 70723 29735900 ~ 29744921 (-)
XLOC_002846 si:ch73-261i21.2 coding downstream 82450 29731060 ~ 29733194 (-)
XLOC_002845 CU861448.1 coding downstream 107462 29708068 ~ 29708182 (-)
XLOC_002851 zpr1 coding upstream 3705 29820172 ~ 29831944 (-)
XLOC_002852 bsx coding upstream 74068 29890535 ~ 29892486 (-)
XLOC_002853 lim2.1 coding upstream 79808 29896275 ~ 29903165 (-)
XLOC_002854 CT737197.1 coding upstream 714676 30531143 ~ 30531257 (-)
XLOC_002855 opcml coding upstream 801359 30617826 ~ 30785501 (-)
XLOC_002843 NA non-coding downstream 324557 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 677640 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 892011 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 non-coding downstream 893393 28922135 ~ 28922251 (-)
XLOC_002858 NA non-coding upstream 1446385 31262852 ~ 31295006 (-)
XLOC_002862 NA non-coding upstream 2261344 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2399946 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 2768218 32584685 ~ 32591462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G426312 NA unknown CI01000304 null 14330048 ~ 14330886 (+)