XLOC_028500


Basic Information

Item Value
gene id XLOC_028500
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7578861 ~ 7581433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057324
taatgataattatttgATATTTCTACACTGTCAATCAAAAATATGCCCTGAAActctaaataaagtgagaaaatTAATCACTTATGAATGATTAGATGTTTGAGTAtatgctttaaacattaaaaattagttaaacaGACAGACATGTAGCAAAACTGTGCTCACGATGATCTGAGTTTAGTTCCTGCCTCTCTGCCGATCctgatttaaatagtatttatttattcagcgaGCTGCTCTTTTAGCCTGAACACCTTTGACAACAGCGACACCAGATCAGCACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGCAGATGACAGCTCAGTGACAGACTCAtaatgtcagtcaacagcagatATTACAGCCCGACAGCGAAGAAAAGCCACACCAAGTGCAGAAATGGAGAGTAACGAGACTCACCTGTAAGGGACTTTGCTTCGTTGGTTTAGTTTGTAGTGATGTTGTtgtagtgtttgtgttcagtcattgctctctctctctctctctcctctgcagcagtgaagatacacacgtgtgtctgttgtgtttctgcTGCAGATCTTTGAGCTGCGCTCAACAGCTGACGCTCCTCCACacgctcctccacatccaggcggattcacagctccaggaaagCTCACACACAGGTCAGCAGTCCAACATCAGTTCCAGCAAGTGTTCAGACATGGAGATCTGTGGCTCTGTGGTAAGAGCGCTGCCCCACGGCTTcaggggttgctggttcaaggccagccagaactctgcgatatgagtgaatggtgagtgagtgtgaggcgcgcctgaagaaggggggataccagttcggtctccccctggagcttccggagccgtgtccagcaggggttatactttacagcctggcaaaaaatttaaaatgaactgtataaaaattctGGACCTTCGTCCCTTCCCCACCCGcttcggttaccatcatttactttgtagaggagtgaccctccacaaagca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0009790 embryo development biological_process
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057324 True 998 lncRNA 0.46 2 7578861 7581433

Neighbor

gene id symbol gene type direction distance location
XLOC_028499 NA coding downstream 12354 7557414 ~ 7566507 (-)
XLOC_028498 NA coding downstream 32744 7538015 ~ 7546117 (-)
XLOC_028497 si:ch211-170p16.1 coding downstream 347381 7229236 ~ 7231480 (-)
XLOC_028496 CR354372.1 coding downstream 356494 7222080 ~ 7222367 (-)
XLOC_028495 lrrn3b coding downstream 365986 7210755 ~ 7212875 (-)
XLOC_028501 NA coding upstream 16777 7598210 ~ 7653189 (-)
XLOC_028502 NA coding upstream 63668 7645101 ~ 7648229 (-)
XLOC_028503 lta4h coding upstream 72174 7653607 ~ 7673165 (-)
XLOC_028504 BX649411.3 coding upstream 98546 7679979 ~ 7680095 (-)
XLOC_028505 cdk17 coding upstream 137421 7718854 ~ 7811925 (-)
XLOC_028494 FO681358.2 non-coding downstream 393550 7185195 ~ 7185311 (-)
XLOC_028493 NA non-coding downstream 554564 7020450 ~ 7024297 (-)
XLOC_028508 NA non-coding upstream 390249 7971682 ~ 7973335 (-)
XLOC_028515 CU695020.1 non-coding upstream 559916 8141349 ~ 8141466 (-)

Expression


Co-expression Network