XLOC_028502


Basic Information

Item Value
gene id XLOC_028502
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7645101 ~ 7648229 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058059
ctgctgcagaggagagagagagagagagcaatgactgaacacaaacactacaACAACATCACTACAAACTAAACCAACGAAGCAAAGTCCCTTACAGGTGAGTCGAGTTACTCTCCATTTCTGCACTTGGTGTGGCTTTTCTTCGCTGTCGGGCTGTAATatctgctgttgactgacattaTGAGTCTGTCACTGAGCTGTCATCTGCTACTGGAGCTCAACTTGATGCCAGTAAAACGGTGTACCTGTGCTGATCTGGTGTCGCTGTTGTCAAAGGTGTTCAGGCTAAAAGAGCTGATGCCCTCTAGTGGTCGTACTTATAATTTAAAACTCAATGAACAGTTTAATACAATATAGGATTTTACAAAAGCAGAAAGTCATCTTTATATCTTTATAAGGCATTTAGTGAAGGAAATGTGTTCGTATTTTTGTTGGTAAAATTATCATTTGTGTCTGCATCAATTAAATATGTAAGCAATGAAAACATTCTGCATCCCCAATATAAGAGCTCGTCAAACAAGTTCTATGTGTCTTTATTGATGAGTGGCGCATTAATTACCTACAGGCTAAATGATCATCTGGAGTGAAGAACATCATGGTGAGAAAGTCACAAGCTTGGAGGTTCAATATTCATGTTTAGCATTTAATTGATCAATATTTGATGTCAAGTCTGTCATCATCAGCTTCTGGAAATTGTTTCACATTACATTCGTATTAGTTTGATATTTCCACATTGTTAATCAAGCATTTGTGCTGAAGTTCAATATAAAGTGAGCACAAATAATGACCCATGAATGATTAGATGATTGAGTATAtgctttaataattattttgacaTTGTTAGGAGGGAAATGAACAGTTGAGACCAAAACGACTGCTGTGTCAGATCAAGAGAAGATTCTGAGCCGCAGAttcaatgaaattaaaataatttactggAGATAGTTTGTGGTTCTGTGGCAGGAGGGCTTCACACTGGCATTGAGTTCGCTGGCTGTTCTCCCTGCCTTACACTAAAACAGAAAATCTCTCCTGCATACAAAGAAAATTACTTAACAGagaatttaaacataaaatagaAAAACTCAGGAATCAGTTGTTTTCAATCCACCAGGAATCCAGTTCCCCTCGAGagctctccatgacctctgacctggctgGGTAgatgggccattcttcaactacgggcacttttagccttgtgaagttgagtaaaaaaacttgttcaaaattaacgtaacatagcctcataagtttaaacactttgtctagttttaagatctgtaagaggacaaactcagataagaagagaaacattttctccatcatgaactgaacaaatgtcaattccagcacatctcaatatactgcttatatttctaaatgacataaatgatggcagtcaaacattgtctaacatcatttttgtatctagtttaaccaaatctttccacaatatcgataataattatatatttgtcagtgaaataaattagttgtgtgctgaattgtacacctgtcacactctaaaacttaatattaatttggttaagagcttattagaaaataaataaactgaatttgtatattaaatagagcatgaactcatacattgtgaatacactttaatgtgtgatgagaactttttaaatgtttttaataatgtgtgtggtgatggaaatgacatttcaacagtttattgtgaaaataatgaaaaatagcttcaccgattaACTTTGAATTGATACAAGCCTTTCAtatatacaaaacactcttatttaccctcattttgttttgattttacatttttttaagttggttttattgttagtttgacaaagaaagaggaatttgaacaaaattatatatatgtttggatatttgatcaaaggacataaaagtgctcgtagttgaagaattacccagATCCTGAAAATAGAGATTTAACAGACACAGACGCTTCAGCTGAACACATCACTACATTAGGTCATGTTTAACTTCAGTCACTGATCAAAATCATGTCAAAGATTaaaaactgattcaaataatcataataataaagtcAACAAGAACAGATTTTGATCTTTCCTGAAACAGATGAAGACAGAAAACGACTCGCTTCAACAGGAAGCAGAACTGTGCTCACGATGACCTCAGTTTAACTCAAGCCTCTCTGTCATTTGAAGATCTCCATAAAAACTGTGTGATATTTAGCATTTGATGATAAGtctctatttaataataattacttttttagtTTAGACCTCAAGACTTTCTGCTTCCTTTTACACATTAAAATGTTTCTTGTTGTCAGCATCAGTGGAGGAAAATACACAGAACTACAGCTGCGCCACAGGAAGGTGAAATCTCAGTGCTTTACATTTGCTGTGCTGAAGTTCAGGAAAAACATCAGCACAATCTTTCAAATCAACGGATCTGCAAAAgtgtaattcagaaatatctccacaggagggcgaCATGTTTAAATTCACACTATTAGATTTGCAGTGGTGTCATTCACCAAAATCACCACATGAGAGCAAACATTTAGAATTCATCAAGTTCGCAGTggtgtaattcagaaatatctccacaggagggAGAAACCTTTATTATTTTAGAGCGGCAGCAGTGCAGTCCACAAAAATCCCCACAAGAGGgcgaatattttaaattcagtagATTCAAGATTTGCAAAAGTGTAGTTCAGAGAAatctccacaggagggcgcaatatTTGATACATATGTAATATTTGTCTATTTGTCTATTGTTAGATCAGATATTCAGTGTGTGTAGTAATGTGTTGATTTGTGTGTCGACTCTACAGGATCAGTGAAGTGTTGTGGACTGTAAGCCTGTTGAACAGAAGCAGAGACGAGTGGACAGAcactgactgtactgatgatgatcatctgctgctgcacaggtgatgtacatcatgtgtgtgtctgttccacatgtcggttaccatcatttgctttgtggagggtcactcctctacaaagtaaatgatggtaaccgaaacgggtggggaagggacgaaggtccagaatttttatacagttcattttaaatttttttgccaggctgtaaagtataacccctgctggacacggctccggaagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058059 True 3129 lncRNA 0.36 1 7645101 7648229

Neighbor

gene id symbol gene type direction distance location
XLOC_028500 NA coding downstream 63668 7578861 ~ 7581433 (-)
XLOC_028499 NA coding downstream 78594 7557414 ~ 7566507 (-)
XLOC_028498 NA coding downstream 98984 7538015 ~ 7546117 (-)
XLOC_028497 si:ch211-170p16.1 coding downstream 413621 7229236 ~ 7231480 (-)
XLOC_028496 CR354372.1 coding downstream 422734 7222080 ~ 7222367 (-)
XLOC_028503 lta4h coding upstream 5378 7653607 ~ 7673165 (-)
XLOC_028504 BX649411.3 coding upstream 31750 7679979 ~ 7680095 (-)
XLOC_028505 cdk17 coding upstream 70625 7718854 ~ 7811925 (-)
XLOC_028506 mcm10 coding upstream 202900 7851129 ~ 7869731 (-)
XLOC_028507 nudt5 coding upstream 222155 7870384 ~ 7876005 (-)
XLOC_028494 FO681358.2 non-coding downstream 459790 7185195 ~ 7185311 (-)
XLOC_028508 NA non-coding upstream 323453 7971682 ~ 7973335 (-)
XLOC_028515 CU695020.1 non-coding upstream 493120 8141349 ~ 8141466 (-)
XLOC_028516 NA non-coding upstream 564941 8213170 ~ 8214435 (-)
XLOC_028517 NA non-coding upstream 571232 8219461 ~ 8219991 (-)

Expression


Co-expression Network