XLOC_028508


Basic Information

Item Value
gene id XLOC_028508
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7971682 ~ 7973335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058061
GTGTTCCTTTGGGAATTAAACCCCCATACTTACTGACGTATATATTAACACTTTATCTGACAtgtattttaaccctttaataaATAGCCCTAGTATGCAGGTTCCTTAGGAATTGAACCCACAACCTACTGACATGTATGCTTAATATGTGCCCCTTTTGTTATGAATGAACCCACAACTTACTgacatatatacagtattaacCCTTTATCTGACATGTATTTTAACCCTTTGATAAATAGTCCTAGTATGCTAAGGAATCAAACCCACAACCTACTGACATATATTATGTTGTAtgttttcaaaacacttttatagTATTATTTTGAAACACTGGAGATTACTAGCCCTAGTCCTGTGTAAAAAATGACTGAATATTTCTTTTGGCTGAGCAATACTTTTAGATGATCACTGTAATCCCCTGAAAACACATCATCATACACCTTGATAACAGTCAACATTACGCTTAGTAAACAAGCGTAAATAAACCCCCAAGAGCCTTTGGAACCCGTCTGATTAAAGAAAAGACGGCTGATTAAACCTGAGTAACATAAATCACACTTCTCCAACATCTCTAGGAATGTTTTTTTTCACCCATCATCAAAGCCATTAAAATACCTTTCCTCATGGGGAACGGAGGCAGTCGGGGAGAAAGGGATGGTAATTTTCTGCCTGATTTCGACCCCATTAGCTTGCTGTTTTTTCTGTCTTCTCGTTGGGTTTGCTAATCAGTGGCTAAGAGAATTAGCTACGGTTTCGGCCGGTTGTCATTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058061 True 774 lncRNA 0.38 2 7971682 7973335

Neighbor

gene id symbol gene type direction distance location
XLOC_028507 nudt5 coding downstream 95677 7870384 ~ 7876005 (-)
XLOC_028506 mcm10 coding downstream 101951 7851129 ~ 7869731 (-)
XLOC_028505 cdk17 coding downstream 159757 7718854 ~ 7811925 (-)
XLOC_028504 BX649411.3 coding downstream 291587 7679979 ~ 7680095 (-)
XLOC_028503 lta4h coding downstream 298517 7653607 ~ 7673165 (-)
XLOC_028509 ccdc3a coding upstream 28539 8001874 ~ 8014463 (-)
XLOC_028510 si:ch211-240l19.8 coding upstream 56633 8029968 ~ 8030583 (-)
XLOC_028511 si:ch211-240l19.7 coding upstream 61046 8034381 ~ 8035520 (-)
XLOC_028512 si:ch211-240l19.6 coding upstream 66456 8039791 ~ 8040436 (-)
XLOC_028513 si:ch211-240l19.5 coding upstream 69470 8042805 ~ 8043964 (-)
XLOC_028501 NA non-coding downstream 318493 7598210 ~ 7653189 (-)
XLOC_028502 NA non-coding downstream 323453 7645101 ~ 7648229 (-)
XLOC_028500 NA non-coding downstream 390249 7578861 ~ 7581433 (-)
XLOC_028499 NA non-coding downstream 405175 7557414 ~ 7566507 (-)
XLOC_028515 CU695020.1 non-coding upstream 168014 8141349 ~ 8141466 (-)
XLOC_028516 NA non-coding upstream 239835 8213170 ~ 8214435 (-)
XLOC_028517 NA non-coding upstream 246126 8219461 ~ 8219991 (-)
XLOC_028518 BX649324.1 non-coding upstream 614452 8587787 ~ 8587908 (-)
XLOC_028520 BX649324.2 non-coding upstream 661369 8634704 ~ 8638629 (-)

Expression


Co-expression Network