XLOC_028509 (ccdc3a)


Basic Information

Item Value
gene id XLOC_028509
gene name ccdc3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8001874 ~ 8014463 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055315
CCTGCATGGGCGCCTTCACTTTCCACTGAATCTGTAAACTGAGCACTTTTTACGCGCGCGTATACTTACTGGCACGGGAAGCATGCACCTTGCGCTTCTGCTGACGCTGGGTTTCGGGTTCGCGTTTGCATGCCAGCTTCCGAGCGAGTGGCGACCCCTGAGCGAGGGTTGTCGGGCTGAACTCGCCGAGATTATCGTGTACGCCAAGGTGCTGGCCATCCACGAGGAGCCGTACGCGTCCAGTCTATATAACTATCTGCCGTACCAGAAGCACGAGCGCGCCGAAGACGCGCTGCTGTACGCGGCGGAGGTGGAGTTGCTATGCGACCAGGCGTGGGGCAGCATGCTGGAGGTGCCCGCGGGTTCACGCCTCAACCTCACGGGACTCGGATACTTCAGCTGTCAGTCACACACGGTGATGGAAAACAACTCCTACATATTCTTTCTCAGGATGGACGAAAACTACAACATCCTCCCGCATGGAGTTAACTTCCAGGATGCCATATTCCCCGACACGCTGGAGAACAGACGCCTGTTTTCCAGCCTCTTCCAGTTCTCAAACTGCTCTGGTGGACAGACAATGCACAACTTTAATAGCGATTGGGAGAGCCAGGAAGACAGCAGGctGCTGTGTTCCTCCATGCAGAAGGTTTTGTTTGAGGAGGAGGAGCGGGTCGGACAGCTTGAGGAGCGTGTGGCCGAGCTGGAGAGGAAGAACCAACAATTAAAAGAACGAGTGGGAAAACTGAGGCATTCTCTGAGGAAAACCCGGAAGGTGCTGCGCCGTGCCGAGCGGGAACGCCAGGAGTTTCATGAGCGTCTTAAGACGGCGGAGAGACATGCAGGACATCACCTCAATGCCATTCCACCCCAACACAGCCCTTCacaacacagatacacacatggACTGTGAGCTTCAGCATacactcacatttacaaaatGGACTCATGGGGCTGCAGGGCAGTCTGCAAAATTCATTAAAAACTTGTAcataatttggtaacactttattttgatggtccacttgagtattagtagactgtctgcttaatatctgttgatatgctccttcagcagacatttagctgactataagaaacttataGTCAACCCcatcctaacagtctacttataatctaatgagaattagttgcaaatttaacaaaatcaacaaacagaccaacaaaataaagtgaaccataatttttatgttgaaaattgAAAATGAAGACTTTATGACTTACAAATGACTTCTTAGTGCAACCTAATGTAATGGTGTAGACTTTTATAGGGAATTAAAGCAGATAACTTTGATTAGGTGAATGTTAAGAGCCGTAAAACATATCTACAGTGCTTAACTTTAACATTtcaaaggcacagttcacccaaaagttttatatttttgaaaatttgaagagttcagaagcAAAAAACTCCAAGTGC

Function

symbol description
ccdc3a Predicted to be involved in negative regulation of gene expression. Predicted to be active in extracellular region. Is expressed in brain; eye; immature eye; skeletal muscle; and somite. Orthologous to human CCDC3 (coiled-coil domain containing 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-326 Predicted to be involved in negative regulation of gene expression. Predicted to be active in extracellular region. Is expressed in brain; eye; immature eye; skeletal muscle; and somite. Orthologous to human CCDC3 (coiled-coil domain containing 3).

Ensembl:

ensembl_id ENSDARG00000026052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055315 True 1444 mRNA 0.47 3 8001874 8014463

Neighbor

gene id symbol gene type direction distance location
XLOC_028508 NA coding downstream 28539 7971682 ~ 7973335 (-)
XLOC_028507 nudt5 coding downstream 125869 7870384 ~ 7876005 (-)
XLOC_028506 mcm10 coding downstream 132143 7851129 ~ 7869731 (-)
XLOC_028505 cdk17 coding downstream 189949 7718854 ~ 7811925 (-)
XLOC_028504 BX649411.3 coding downstream 321779 7679979 ~ 7680095 (-)
XLOC_028510 si:ch211-240l19.8 coding upstream 15505 8029968 ~ 8030583 (-)
XLOC_028511 si:ch211-240l19.7 coding upstream 19918 8034381 ~ 8035520 (-)
XLOC_028512 si:ch211-240l19.6 coding upstream 25328 8039791 ~ 8040436 (-)
XLOC_028513 si:ch211-240l19.5 coding upstream 28342 8042805 ~ 8043964 (-)
XLOC_028514 wnk1b coding upstream 31101 8045564 ~ 8155571 (-)
XLOC_028501 NA non-coding downstream 348685 7598210 ~ 7653189 (-)
XLOC_028502 NA non-coding downstream 353645 7645101 ~ 7648229 (-)
XLOC_028500 NA non-coding downstream 420441 7578861 ~ 7581433 (-)
XLOC_028515 CU695020.1 non-coding upstream 126886 8141349 ~ 8141466 (-)
XLOC_028516 NA non-coding upstream 198707 8213170 ~ 8214435 (-)
XLOC_028517 NA non-coding upstream 204998 8219461 ~ 8219991 (-)
XLOC_028518 BX649324.1 non-coding upstream 573324 8587787 ~ 8587908 (-)
XLOC_028520 BX649324.2 non-coding upstream 620241 8634704 ~ 8638629 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_00141927_00149149 CCDC3, CCDC3A coding CI01000066 null 141777 ~ 149149 (-)