XLOC_002851 (zpr1)


Basic Information

Item Value
gene id XLOC_002851
gene name zpr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29820172 ~ 29831944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005280
AAGCGCATGAGGTTATTACAGAAAAACGTGTGCAAGCGCCTGGAAACTTCTAGCAAGACGCCACTCATTAATATCGAATCGCTTTTTCTCTAGTGAACTAGAGATTGCAAATAGTTTTAACCTAAAGTGTCTCACAGGATGTCAGTTATTGAAGAGGAGCGCGTCCGCGGCAGCGTTTTTAAAGATATTAATGCGGAAGATGAAGATCAGCAACCTACAGTCATCGAGAGTTTGTGCATGAACTGTTATGAAAATGGAAGCACGCGTCTTCTTCTTACTAAAATCCCTTTCTTCAAAGAAATCATCATCAGCTCCTTCGCATGTCCACACTGTAACTGGTCCAACACAGAAATCCAGTCAGCTGGTCGGATACAAGAACAGGGTGTCCAGTACACCCTACAAGTAAAGACCAAACGGGACATGAACCGAGAGGTTGTGAAGTCTGACAGTGCGTCCACCAGAATCCCACAGCTTGATTTTGAAATTCCTGCTTTTACACAGAAGGGGTCTTTGTCAACAATCGAGGGCCTTCTGGACAGAGCAGTGGCGGGTTTAGAACAGGACCAACCTATAAGAAAGGCAACAGATCCAACTGTAGCTGACAAAATAGAGGAATTCATCCAGAGATTGAAGAAACTTAAGGAAGTAGAGGATGAATTCACATTAATTATTGATGATCCATCAGGGAACAGTTTTATCGAGAACCCATTTGCGCCTCAGAAAGACGCTGCTCTGTCTGTGACGTATTATAAAAGGACACCTCAACAAAACGCTTCTCTAGGTATAGAGGTTGAAGAAGAACAAGCAGATGAGAGTCCTGGCAATGATCTAGACACCCTGAGGAATGAGGTATTAGTGTTCAACACTAACTGCCCAGAATGCAACGCTCCAGCTAATACAAACATGAAGCTTGTCCAAATTCCACACTTTAAAGAGGTCATTATAATGGCCACTAATTGCGATAGCTGTGGACATCGCACCAATGAGGTAAAATCAGGAGGAGCCACAGAAGAGCTGGGAACCAGAATAACACTACACTTAACAGATCCTTCAGATATGTCCAGAGACCTGCTGAAGTCAGAGACATGCAGTGTGTTGATTCCCGAGCTGGAGTTTGAGTTGGGAATGGCGGCTCTCGGAGGGAAGTTCACGACGGTAGAGGGGCTGTTGAAGGACATTAAAGAACTGATTGTTTCGAAAAACCCCTTTATGTGTGGAGACAGCTCTGCATCTGACAGAGTGGAGAAGCTGCAGCTGTTTGGACAAAAAATCGACAAGATAATGGCGGGAGAAATGGATGTGCATATTGTCCTGGATGATCCAGCAGGAAATAGCTATCTTCAGAATGTTTATGCTCCAGATCCAGACCCAGAAATGAAGATTGAGAAATACACCAGGACTTTTGAGCAGAACGAAGACTTGGGCCTCAATGACATGAAAACAGAAGGGTACGCAGAGAAATAGGCTTGAAGTCAGAAAAAATGGAGATTATATGTTGCTAATGGCCAAATTCTGTCAAATTCACCATTATGTACCattatttaattcagttttaCATGTAATTGTAATATCCCATGTAATTAACACTTCTGCTGTCGTTAAAGTCAGCTTTATTATTTAAGAAAAGAAATACAGCTGTTTTGGCTTGAATGAAAGTGCAAGGTTGTGTATTTTCCTTGCTGCCTATAAAGTAATTTTTAAGTTATAAGTTTTGGTCgttgtgttaataaataatgtaacaaCAAAAA
>TCONS_00005281
tgtagagccACTTGGGCTCCAACGAGGGGGAGCTCtaactcctcctcctataagctgtctTAATGTGTACACCCACCCCACCCCcatcacttgtagaagaagtgcaaggaagaaggagctggagctcaagctctGCTCAAGTGGCTCTATAGTTGAAGAAGAACAAGCAGATGAGAGTCCTGGCAATGATCTAGACACCCTGAGGAATGAGGTATTAGTGTTCAACACTAACTGCCCAGAATGCAACGCTCCAGCTAATACAAACATGAAGCTTGTCCAAATTCCACACTTTAAAGAGGTCATTATAATGGCCACTAATTGCGATAGCTGTGGACATCGCACCAATGAGGTAAAATCAGGAGGAGCCACAGAAGAGCTGGGAACCAGAATAACACTACACTTAACAGATCCTTCAGATATGTCCAGAGACCTGCTGAAGTCAGAGACATGCAGTGTGTTGATTCCCGAGCTGGAGTTTGAGTTGGGAATGGCGGCTCTCGGAGGGAAGTTCACGACGGTAGAGGGGCTGTTGAAGGACATTAAAGAACTG
>TCONS_00005282
AAGCGCATGAGGTTATTACAGAAAAACGTGTGCAAGCGCCTGGAAACTTCTAGCAAGACGCCACTCATTAATATCGAATCGCTTTTTCTCTAGTGAACTAGAGATTGCAAATAGTTTTAACCTAAAGTGTCTCACAGGATGTCAGTTATTGAAGAGGAGCGCGTCCGCGGCAGCGTTTTTAAAGATATTAATGCGGAAGATGAAGATCAGCAACCTACAGTCATCGAGAGTTTGTGCATGAACTGTTATGAAAATGGAAGCACGCGTCTTCTTCTTACTAAAATCCCTTTCTTCAAAGAAATCATCATCAGCTCCTTCGCATGTCCACACTGTAACTGGTCCAACACAGAAATCCAGTCAGCTGGTCGGATACAAGAACAGGGTGTCCAGTACACCCTACAAGTAAAGACCAAACGGGACATGAACCGAGAGGTTGTGAAGTCTGACAGTGCGTCCACCAGAATCCCACAGCTTGATTTTGAAATTCCTGCTTTTACACAGAAGGGGTCTTTGTCAACAATCGAGGGCCTTCTGGACAGAGCAGTGGCGGGTTTAGAACAGGACCAACCTATAAGAAAGGTGTGCACCTCAACAGCATGAATATATGCCTTTATGCTTGGggttatattataaattatattatgtacTTGAGttgaagaaaacattttaaagcatcaaaataaactaatattattttaaa

Function

symbol description
zpr1 Predicted to enable zinc ion binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human ZPR1 (ZPR1 zinc finger).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2110 Predicted to enable zinc ion binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human ZPR1 (ZPR1 zinc finger).

Ensembl:

ensembl_id ENSDARG00000043542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005280 False 1748 mRNA 0.42 13 29820172 29831944
TCONS_00005281 False 550 mRNA 0.48 5 29824230 29827000
TCONS_00005282 True 700 mRNA 0.41 4 29829513 29831944

Neighbor

gene id symbol gene type direction distance location
XLOC_002850 hist2h2l coding downstream 3705 29815644 ~ 29816467 (-)
XLOC_002849 si:ch73-261i21.5 coding downstream 11067 29793817 ~ 29809105 (-)
XLOC_002848 vps11 coding downstream 51616 29751029 ~ 29768556 (-)
XLOC_002847 ift46 coding downstream 75251 29735900 ~ 29744921 (-)
XLOC_002846 si:ch73-261i21.2 coding downstream 86978 29731060 ~ 29733194 (-)
XLOC_002852 bsx coding upstream 58591 29890535 ~ 29892486 (-)
XLOC_002853 lim2.1 coding upstream 64331 29896275 ~ 29903165 (-)
XLOC_002854 CT737197.1 coding upstream 699199 30531143 ~ 30531257 (-)
XLOC_002855 opcml coding upstream 785882 30617826 ~ 30785501 (-)
XLOC_002856 panx3 coding upstream 1165294 30997238 ~ 31016806 (-)
XLOC_002845 CU861448.1 non-coding downstream 111990 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 329085 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 682168 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 896539 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 non-coding downstream 897921 28922135 ~ 28922251 (-)
XLOC_002858 NA non-coding upstream 1430908 31262852 ~ 31295006 (-)
XLOC_002862 NA non-coding upstream 2245867 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2384469 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 2752741 32584685 ~ 32591462 (-)

Expression


Co-expression Network