G934785


Basic Information

Item Value
gene id G934785
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2030833 ~ 2106325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1065857
acagctagagaaaccagcctggtataatacagctagagaacccagcctggtataatatagctagagagaccagcctggtataatacagctagagagaccagcctggtataacacagctagagagaccagcgtggaataatacagctagagagacaagcctggtatgacacagctagagagaccagtctggtataatacatctagacctgcctggtataataaatctagagagaccaacctggtataatacatctagagagacgtgcctggtataatacatttagtccagcctggtataatacatctagagagaccagcctggtatattACATCTAGatcagcctggtataatacatcaaGAGAGTCCAGCCTGGTACAATaaatctagaccagcctggtattatacagctagagagaccagccagGTATAATTCAGCTAGAGAGAACACCCtgatataatacagctagagagaccagcttggtataatacatctagaccagcctggtataatacatctagagagaccagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagactggtgtaatacagctagagaaaccagcctggtataatacagctagagagaccagccttgtataatacatctagatagaccagcatggtataatacatctagagagaccagcctggtataattaatctagaccagcctggtataatacatctagagagccAAGCAGGTTATGATACACCTAGAGAGACcggcctggtataatacatctagacccgcctggtataatacagatagagagaacagcctggtataatacaactagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtatactacagctagagagacaagcCTGGTATGATACACCTAGAGAGACCAagctggtataatacatctagagaggcAAGCCTGGTATGATACAGCTTGTGAGAACAGCCTgctataatacatctagagagaccaacctggtataatacatatagagagacatgcctggtataatacatctagtccagcctggtataatacagctagagagaccagcctggtgtaatacatctagagagaccagcctggtgtaatacatctagagagaccagcctggtataatacatctagaccagcctggtgtaATAAAGCTAGAGAGACAAGACTCTTATACTACAACTAgacaagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtataacacagctagagagaccagcgtggaataatacagctagagagccAAGCCTGGTACGATACACCTAGAGAGACcggcctggtataatacatctagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcatggtatgatagagctagagagaccagcctggtatactacagctagagagacaagcCTGGTGTAATaaatctagaccagcctggtataatacagctatagaccccagcctggtataatgcaattagagagaacagcctggtataatacatctagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtatactacagctagagagacaagcCTGGTGTAATaaatctagaccagcctggtataatacagctatagaccccagcctggtataatacatctagagagaacagcctggtataatacatctagaaagaccagcctggtataatacagctagagagaccagcctggtgtaataaaactagaccagcctgttataatacaactagagagaccagactggtacaatacagctagagagacctgcctggtataatacaactagaccagcctgttataatacaactagaaagaccaacctggtataatacatatagagagaccagcctggtataatacatctattccagcctggtgtaatacatctagagagaccagcctggtataatacagcaagagagaccaccctggtataatacatctattccagcctggtgtaatacatctagagagaccagcctggtataatacagcaagagagaccagcctggtataatacatctagaccagcccggtgtaatacagctagagagaccagactggtataaaacaactagaccagcctggtattatacagctagagagaccagcctggtataatacagctagagaaaccatcatggtataatacagctagagagatcagcctggtataatacatctagaccagcctggtattatacagctagagaaaccagcctggtataatacagctagagaaccCAGCCTGGTA
>TU1065868
GTAtaagacagctagagagaccagcctggtataaaacagctagagagaccagcctggtataatacatctagaccagcctggtataatgcagctagagagaacagcctgttataatacagctagagagaccagcctggtataatgcagctAGAGAGAAAAGCCTGGTGTAATACATCTAGAAACGtttggtataatacagctagagagaccagcctgaaataatacatctagaccagcctggtataaaatatctagaccagcctggtataatacatctagagttaccagcctggtataatacagctagagagaccagcctggtataatacaggtagagagaccagcctggtataatacagctagagagaccattctggtataatacatctagaccagcctgttataatactactagaccagcctggtataatacagctagatagaccagcctggtataatgcagctagagaaaccagcctggtataatacagctagagagaccatcctggtataatacagctagaccaACCAGGTATAATAcacctagagagaccagcctggtataataaagctagagagacccgcctggtacaatacagctagagagaccaaccagGTATAATAcacctagagagaccagcctggtataataaagctagagagacccgcctggtacaatacagctagagagaccaaccAGGTATAATAcacctagagagaccagcctggtataataaagctagagagacccgcctggtataataaagctagagagaccagcctggtataaaacagctagagagaccagcctggtatagtacagctagaccagcctgctataatgcatctagaccagcctggtataatacagcaggagagaccagcctggtataatatatctagagagaccagcctggtatagtaCAGCTAGACCAGCCTGCTATAATGCATctagaacagcctggtataatacagcaggagagaccagcctgatataatacagctagagcgaccagcctggtataatacaactagagagaccagcctagtTTAAtgaagctagagagaccagcctggtataatacatatagaccagcctggtataatacacctagaccagcctgttataatactactagagaaaccagcctggtacAATACATGTAGACCAGactgttataatactactagaccagcctggtataatacagctagagagaccagcctggtatagcacagctacagagaccagcctggtataatacaggtagagagaccagcctggtataatgcatcgAGACCAGacgggtataatacagctagagagcccagcctggtataatacatctagaccagcctggtataatacatctagacctgcctggtaaaatacagctagatagaccagcctggtataatacagctagagagaccagcctggtataaaacagctagagagaccagcctggtataataccgcTAGACCATCCTGGTATAATAccactagaccagcctggtataataaatctagagacaccagcctggtataatacaactagagagaccagcctggtataatgcagctagagagaaaagcctggaataatacatctagaccagtctggtaaaatacatctagagagaccccttggtataataaagctagagagaccagcctggtataaaacagctagagatACCAGCTTGGTATAATATccctagaccagcctggtataatgcagctAGAGAGAAAAGCCTTGTGTAATACATCTAcaccagtctggtataatacagctagagagaaaagCCTGAAATAATACACctagtccagcctggtataatatatctagaccagtctggtataatacatctagagagaccagcctggtttaatacagctagagagaccagcctggtaaaatgcatctagaccagcttggtataatacagctagagcgaccagcctggtattatacagctagaccagcctggtataatacagctagagagaacagcctggtataatacagctacagagaccagcctAGTGTTATACAGGTAGAgggaccagcctggtataatacatctagaccagcctggtataatatatctggaccagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtataataaagctagagagaccagcctggtataaaacagctagatAGACcatcctggtataatacatctagaccagcctggtataatgcagctAGAGAAAAAAGCCTGGTacaatacatctagaccagtctggtataatacatctagagagaccccttggtataataaagctagagagaccagcctggtacaatacagctagagagaccagcctggtataatacaactagaaaaaccagcctggtataatacatctagaccagcctggtataatactacaacaccagcctggtataatacagctagagagaccagcctggtataatacatctagaccagcctgttataatactacaacaccagcctggtataatacagctagagagaccagcctggtatagcacagctacggacaccagcctggtataatgcatcgAGACCAGccgggtataatacagctagagagaccagcctggtataatacatctagaccagcctggtaaaatacatctagatagaccagcctggtttaatacagctagagagacaatcctggtataatacagctagagagaccagcctgctataaaacagctagagagaccagcatggtataatagcgctagaccagcctggtataatacagctagagacaccagcctggtataatacaactagaaaaAACCGTCTGGTATAATACacctagaccagcctggtataagacagctagagagaccagcctgatataaaacagctagagagaccagcttgGTATAATATacctagaccagcctggtataatgcagctAGAGAGAAAAGCCTTGTGTAATACATCTACACCAgtctggtataataaagctagagagaaaAGCCTGAAATAATACACctagtccagcctggtataatatatctagaccagcctggtataatacagctagagagaccccttggtataataaagctagagagaccagcctggtataaaacagctagagagagcagcctggtataatacagctagagagatcagcctggtataatacatctagacctgcctgttataatacatctagaccagcctggtataatgcatctagagagaccagcctggtataatacagctagatagaaaagcatggtataatacatctagaccagcctggtataatgcatctagaccagcctggtataatacagctacagagaccagcctggtatagcacagctacagagaccagcctggtataatacagctacagagaccagccgggtataatacagctagagagcccagcctggtataatacatctagaccagcctggtaaaatacagctagagagaccagcgtggtataaaacagctagacagatcagcctgttaTAATACCGCTAGACCATCCTGGTATAATAccactagaccagcctggtataataaagctagagacaccagcctggtataatacagctacagagaccagccgggtataatacagctagagagcccagcctggtataatacatctagaccagcctggtaaaatacagctagagagaccagcgtggtataaaacagctagacagatcagcctgttaTAATACCGCTAGACcatcctggtataatacaacgagaccagcctggtttaataaagctagagagaccagcctggtaaaatgcatctagaccagcctggaatAAAGCAGCTAGCGAGAAAAGCGTGGTATTTtcgaccagcctggtataattcagctagagagaccagcctgaaataatacatctagaccagccagGTATAATAtatctagaccagcctgttataatactacaacaccagcctggtataatacagctagagacaccagccttgtataatacaactagaaaaaccagcctagtgtaatacagctagaccagcctggtataatacagctagagagaccagcctgttataatacaactagagagaccagcctggtacaatacagctagagagaccagcctggtataatacagctagagagacccgcCTGGTATAagatagct

Function

NR:

description
PREDICTED: paternally-expressed gene 3 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1065857 False 2440 lncRNA 0.43 4 2030833 2038542
TU1065868 True 4220 lncRNA 0.44 4 2069896 2106325

Neighbor

gene id symbol gene type direction distance location
LOC110535167 LOC106579754 coding upstream 175264 1839051 ~ 1855581 (+)
nktr nktr coding upstream 551205 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 666561 1352989 ~ 1364272 (+)
LOC110535150 LOC106590688 coding upstream 1171302 742492 ~ 859531 (+)
LOC110535151 LOC106579763 coding upstream 1383872 632123 ~ 646961 (+)
si:ch73-206p6.1 LOC106579752 coding downstream 270376 2376701 ~ 2387592 (+)
plod2 LOC106579751 coding downstream 313014 2419339 ~ 2530974 (+)
LOC118937290 NA coding downstream 1141501 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 1295727 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 1417232 3523557 ~ 3616312 (+)
G934789 NA non-coding upstream 12390 2018137 ~ 2018443 (+)
G934777 NA non-coding upstream 20729 2009755 ~ 2010104 (+)
G934763 NA non-coding upstream 30699 1999784 ~ 2000134 (+)
G934759 NA non-coding upstream 33888 1996718 ~ 1996945 (+)
G934755 NA non-coding upstream 36011 1994072 ~ 1994822 (+)
G934804 NA non-coding downstream 5417 2111742 ~ 2116878 (+)
G934810 NA non-coding downstream 9110 2115435 ~ 2117609 (+)
G934811 NA non-coding downstream 10835 2117160 ~ 2122561 (+)
G934812 NA non-coding downstream 16308 2122633 ~ 2159184 (+)
G934883 NA non-coding downstream 71769 2178094 ~ 2184435 (+)
G934640 NA other upstream 121753 1908660 ~ 1909080 (+)
G934579 NA other upstream 203467 1826627 ~ 1827366 (+)
G934256 NA other upstream 534819 1488076 ~ 1496014 (+)
G934169 NA other upstream 723074 1307527 ~ 1307759 (+)
G933799 NA other upstream 1079249 949531 ~ 951584 (+)
G935846 NA other downstream 1443714 3550039 ~ 3550487 (+)
G935976 NA other downstream 1874446 3980771 ~ 3981151 (+)
G935977 NA other downstream 1875526 3981851 ~ 3982198 (+)
G937051 NA other downstream 2913580 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 3036992 5143317 ~ 5144565 (+)

Expression


Co-expression Network