XLOC_028513 (si:ch211-240l19.5)


Basic Information

Item Value
gene id XLOC_028513
gene name si:ch211-240l19.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8042805 ~ 8043964 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055319
TATAAAGAGGGTGAGGTTTTGGTAACATTCATACGGACACCAGTGCGAGTGAACCATGGGAGTCCTTTATGATCTTCGGCTGGTGTCTCTAGCCGTATTGATGCTGGCGTTTCACCTGGACTTTGGCAAAGCTGACGTCCGAGTGTTTGATATTCACGCCATGGACCTCTCTGGAGATGTCATCGGAAACAAACCCGATCCGTATATCAAGATCTGGTGTGGCTCTACTTTTGGAGGGATGACGGAGTTTCTCAACAGTACTAATAATCCTGAGTGGTCTGCAGAGTTCAGCTTCCCCATATGCAAAGCTACTGAGATCCTGAAGCTGGAGGTGTGGGACAAAGATCTGTTTTTTGATGATAAATTGGGCACGTGTACTAGAACCGTGCAGTATGGGTCATTTGACATTCCTTGTCATCTGTCGAAAGGAACTCTGTTCTACAAGTATGAGTTGAGATGATTTGTACCAAAGCTTATTTGAGACAAATTTCCACTGTAAGTAGATTGAtggtaataaaaaaatgtcatgaaCGCTCTGCAGAGTATGTTTTCGCATTGATATGCAAATTATCAGCCCTCTTCTTTTTcacatattttccaaatgatgtttaacagagcaaggaatttttcacagtatttcctataatattgtttcttctggagaaagtcttattagttttatttaggctagaatgaaagcagtttctacctttttcaatattattagctcccttcaacagtatttgttttcgattgtgTACGGagcaaaccatctttatacaatgttataccctagttaagcctttaaatatcactttaagctcaatacttgTATCTTGAAAACTATAAAGCCAAATATtatgtcctgtcatcatggcaaagataaaagaaatccgttattagaaatgagttactaaaactgttatgttctttctattaaacagaaatagggggaaGAAAATATACAAGGagactaataatactgacttcagctgtatgctTGGTTGAAATTTAATGCTAATGTATTTCCTCATTTGTTAAACGCTTTCAATCTgttcattaaaaatgctgataaaAGCTTTAA
>TCONS_00055320
TCAGCCATGGGAGTCCTTTATGATCTTCGGCTGGTGTCTCTAGCCGTATTGATGCTGGCGTTTCACCTGGACTTTGGCAAAGCTGACGTCCGAGTGTTTGATATTCACGCCATGGACCTCTCTGGAGATGTCATCGGAAACAAACCCGATCCGTATATCAAGATCTGGTGTGGCTCTACTTTTGGAGGGATGACGGAGTTTCTCAACAGTACTAATAATCCTGAGTGGTCTGCAGAGTTCAGCTTCCCCATATGCAAAGCTACTGAGATCCTGAAGCTGGAGGTGTGGGACAAAGATCTGTTTTTTGATGATAAATTGGGCACGTGTACTAGAACCGTGCAGTATGGGTCATTTGACATTCCTTGTCATCTGTCGAAAGGAACTCTGTTCTACAAGTATGAGTTGAGATGATTTGTACCAAAGCTTATTTGAGACAAATTTCCACTGTAAGTAGATTGAtggt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-327 No description available

Ensembl:

ensembl_id ENSDARG00000039393

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055319 False 1084 mRNA 0.37 2 8042805 8043964
TCONS_00055320 True 463 mRNA 0.45 1 8043377 8043839

Neighbor

gene id symbol gene type direction distance location
XLOC_028512 si:ch211-240l19.6 coding downstream 2369 8039791 ~ 8040436 (-)
XLOC_028511 si:ch211-240l19.7 coding downstream 7285 8034381 ~ 8035520 (-)
XLOC_028510 si:ch211-240l19.8 coding downstream 12222 8029968 ~ 8030583 (-)
XLOC_028509 ccdc3a coding downstream 28342 8001874 ~ 8014463 (-)
XLOC_028508 NA coding downstream 69470 7971682 ~ 7973335 (-)
XLOC_028514 wnk1b coding upstream 1600 8045564 ~ 8155571 (-)
XLOC_028515 CU695020.1 coding upstream 97385 8141349 ~ 8141466 (-)
XLOC_028516 NA coding upstream 169206 8213170 ~ 8214435 (-)
XLOC_028517 NA coding upstream 175497 8219461 ~ 8219991 (-)
XLOC_028518 BX649324.1 coding upstream 543823 8587787 ~ 8587908 (-)
XLOC_028504 BX649411.3 non-coding downstream 362710 7679979 ~ 7680095 (-)
XLOC_028501 NA non-coding downstream 389616 7598210 ~ 7653189 (-)
XLOC_028502 NA non-coding downstream 394576 7645101 ~ 7648229 (-)
XLOC_028500 NA non-coding downstream 461372 7578861 ~ 7581433 (-)
XLOC_028520 BX649324.2 non-coding upstream 590740 8634704 ~ 8638629 (-)

Expression


Co-expression Network