G935021


Basic Information

Item Value
gene id G935021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2328025 ~ 2335784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1066171
acaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacaagaacaggagtgtagtgtagacaggtacagaagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacatgaacaggagtgtagtgtagatatgtacaggagtgtagtgtagacatacacaggagtgtagtgtagtgtagaca
>TU1066176
gtacaggagtgtagtgtagtgtagacatttacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtgCAGGAGTGTAGTGaagacaggtac
>TU1066179
gtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagccaggtacaggagtgtagtgtagtgtagacatgtacaggattgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagatatgtacttgagtgtagtgtagtgtagacaggtacaggagtgtagtgtag
>TU1066175
caagaacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaagaacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacaagaacaggagtgtagtgtagtgaagacaggtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagatatgtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacagtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagacaggtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagatatgtacttgagtgtagtgtagtgtagacaggtacaggagtgtagtgtag
>TU1066173
gtgtagacaggtacaggagtgtagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacaagaacaggagtgtagtgtagacaggtacagaagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagccaggtacaggagtgtaatgtagacaggtacaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1066171 False 349 lncRNA 0.43 5 2328025 2335076
TU1066176 False 300 lncRNA 0.46 2 2328446 2329561
TU1066179 False 718 lncRNA 0.46 3 2329109 2334265
TU1066175 False 583 lncRNA 0.44 2 2329583 2334265
TU1066173 True 348 lncRNA 0.45 4 2332057 2335784

Neighbor

gene id symbol gene type direction distance location
LOC110535167 LOC106579754 coding upstream 472456 1839051 ~ 1855581 (+)
nktr nktr coding upstream 848397 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 963753 1352989 ~ 1364272 (+)
LOC110535150 LOC106590688 coding upstream 1468494 742492 ~ 859531 (+)
LOC110535151 LOC106579763 coding upstream 1681064 632123 ~ 646961 (+)
si:ch73-206p6.1 LOC106579752 coding downstream 40917 2376701 ~ 2387592 (+)
plod2 LOC106579751 coding downstream 83555 2419339 ~ 2530974 (+)
LOC118937290 NA coding downstream 912042 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 1066268 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 1187773 3523557 ~ 3616312 (+)
G935015 NA non-coding upstream 3784 2324022 ~ 2324241 (+)
G935007 NA non-coding upstream 9140 2318636 ~ 2318885 (+)
G934981 NA non-coding upstream 43307 2284459 ~ 2284718 (+)
G934970 NA non-coding upstream 56651 2270847 ~ 2271374 (+)
G934961 NA non-coding upstream 68285 2259302 ~ 2259740 (+)
G935040 NA non-coding downstream 18390 2354174 ~ 2357652 (+)
G935078 NA non-coding downstream 114614 2450398 ~ 2450646 (+)
G935087 NA non-coding downstream 133015 2468799 ~ 2470419 (+)
G935089 NA non-coding downstream 134823 2470607 ~ 2471456 (+)
G935099 LOC106572245 non-coding downstream 177956 2513740 ~ 2514425 (+)
G934640 NA other upstream 418945 1908660 ~ 1909080 (+)
G934579 NA other upstream 500659 1826627 ~ 1827366 (+)
G934256 NA other upstream 832011 1488076 ~ 1496014 (+)
G934169 NA other upstream 1020266 1307527 ~ 1307759 (+)
G933799 NA other upstream 1376441 949531 ~ 951584 (+)
G935846 NA other downstream 1214255 3550039 ~ 3550487 (+)
G935976 NA other downstream 1644987 3980771 ~ 3981151 (+)
G935977 NA other downstream 1646067 3981851 ~ 3982198 (+)
G937051 NA other downstream 2684121 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 2807533 5143317 ~ 5144565 (+)

Expression


Co-expression Network