XLOC_028520 (BX649324.2)


Basic Information

Item Value
gene id XLOC_028520
gene name BX649324.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8634704 ~ 8638629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055330
CTGGGGAAACATTTAGGAAATGATAGTAATCCGTTCGAAGGAGCCGTTTCCTTTAGTAGCTTGACTAAAAAATAAAGTCACTACAAGTGAATCCCCTCAAAACAGCAGCTGCGCGTAAAACACCAACACCTTGGTGACCTGAGGCACTCGCGGAGTCTGACATCTGCGGTGAATGTTCTTTTCATAAAAAGCAACCAAAGTGGATGTCGGTGCGTAATGGATGTAAAGTTAAAACCGAGCGCAGATCAGAAGATAAGTGCAAGCATAATCCAAACTCTCTCCTTTCTGTCTCTGCCGGGTCTCTCGATATGAACTAACACTTCTGCGCTCCGATGGCACAACATAACCCTCCCTCCTGCTCGCACTTCTCCGCACCCCCTTCGTTTTGACAatggagaggaggaggaggagcgcGAGGGGAGCCGAAGACCTGGAGAGGAATTTTGGGGAGGCCAAACAACACAAGAGGGCAGCAGACGAGAACGCGCTTTGATTTTCCCGTGCACAAGAGCGCGTTTTGGACTTTTTGGacacaatgcatttattaaagaGGAACTTGAGATATTCGAGTCGCGCAAAAGTCAAAAGTTCACAGAGGGAGAGGAATAAAAGAGTTAACGGCTCGGAAAATATCAAAGTTCACACGCGTATAATCTCATTCTCCTTAGCACTATAGTTTACCGCAATAAATCCGCGCAAGGGGGAAAGACAAAATCCCGGTTTGACACGCGGAATAAAAGCCACGCATGTGATCTTTGACAGTTCAACTTCTGCTACCCTCTAAATCACTCTCCACAGTTCGGTCATGAGATATCCAATCGCGCTTGGGAACGAGCAAGACTAAACCGTGCCATATAATGTGGGGACAATTTTATCAGCACGCCCGTTTTAGACGAATTTACAACTGATAACCAACGCTGCAGACATAAACAGCCACATTGCACCCTATCCTTCAGATGTGCGGTGTAAGGAATGCAAATACAATGAGTGTTTTACAGCTCCCGACTCTTGGAGAGGTTCGGGAATTATAGCGAGCCCTGTGCCATTCTTGCATCACCCCCACACCTCTCCTTTGAGTGCCGTGCCTACAGACATGTCAGAATTGGTGTGAGAGACGCCACTCAATTTCCGAGCAGTCTGTGCATGATAAAGCGCCTCTCCGGACCCTTTCATCTCCTCTAATCCACACGCCCAGCCATCACCTTTACGCCTCCCATCGCAGACCTAGGGCTGGGCTCCATGTCCCTCCCTCACCCTGGGACCCTGACGCACGGCAAAAAGCACAGCAGCGTGAGTTTTCATttctgggtaaactatccctttaaggttggGATCTGATTATGTAAACCAGCTCCACATCTGACAGAGAGCAGGGACGAAACAGAGGTGAGAGAAGACAAGGAAAGCGCTG

Function

GO:

id name namespace
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055330 True 1411 lncRNA 0.48 2 8634704 8638629

Neighbor

gene id symbol gene type direction distance location
XLOC_028519 fbxl14b coding downstream 22863 8609517 ~ 8611841 (-)
XLOC_028518 BX649324.1 coding downstream 46796 8587787 ~ 8587908 (-)
XLOC_028517 NA coding downstream 414713 8219461 ~ 8219991 (-)
XLOC_028516 NA coding downstream 420269 8213170 ~ 8214435 (-)
XLOC_028514 wnk1b coding downstream 479133 8045564 ~ 8155571 (-)
XLOC_028521 BX842699.1 coding upstream 70453 8709082 ~ 8735591 (-)
XLOC_028522 ttll12 coding upstream 100464 8739093 ~ 8779189 (-)
XLOC_028523 pnpla3 coding upstream 141550 8780179 ~ 8795250 (-)
XLOC_028524 mpped1 coding upstream 211187 8849816 ~ 8903240 (-)
XLOC_028525 NA coding upstream 265662 8904291 ~ 8905453 (-)
XLOC_028515 CU695020.1 non-coding downstream 493238 8141349 ~ 8141466 (-)
XLOC_028508 NA non-coding downstream 661369 7971682 ~ 7973335 (-)
XLOC_028527 NA non-coding upstream 409677 9048306 ~ 9050945 (-)
XLOC_028533 NA non-coding upstream 750189 9388818 ~ 9389648 (-)
XLOC_028534 NA non-coding upstream 875919 9514548 ~ 9521942 (-)

Expression


Co-expression Network