G935413


Basic Information

Item Value
gene id G935413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2858832 ~ 2859363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1066638
GTATAGAACACTTCATGACAAATGCCCTTTTAATTtttgggactatctgttgttccatgtagtggaTATGttaattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttcaatgggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaaggacaatgtgtttctatgggctaatagcagtaaggactatctgttattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaaggactatctgttattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaatgccaaGTTACATTTCCATCC
>TU1066639
GTATAGAACACTTCATGACAAATGCCCTTTTAATTtttgggactatctgttgttccatgtagtggaTATGttaattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttcaatgggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaaggacaatgtgtttctatgggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaaggactatctgttattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaaggactatctgttattcaatgtgtttctattggctaatagcagtaaggactatctgttattcaatgtgtttctatgggctaatagcagtaatgccaaGTTACATTTCCATCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106610361

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1066638 False 430 lncRNA 0.35 2 2858832 2859363
TU1066639 True 475 lncRNA 0.35 2 2858832 2859363

Neighbor

gene id symbol gene type direction distance location
plod2 LOC106579751 coding upstream 327858 2419339 ~ 2530974 (+)
si:ch73-206p6.1 LOC106579752 coding upstream 471240 2376701 ~ 2387592 (+)
LOC110535167 LOC106579754 coding upstream 1003263 1839051 ~ 1855581 (+)
nktr nktr coding upstream 1379204 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 1494560 1352989 ~ 1364272 (+)
LOC118937290 NA coding downstream 388463 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 542689 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 664194 3523557 ~ 3616312 (+)
LOC110535177 tceb1 coding downstream 774577 3633940 ~ 3636886 (+)
flj11011l ube2w coding downstream 793432 3652795 ~ 3676466 (+)
G935400 NA non-coding upstream 31865 2826075 ~ 2826967 (+)
G935379 NA non-coding upstream 60900 2797576 ~ 2797932 (+)
G935356 NA non-coding upstream 75290 2783184 ~ 2783542 (+)
G935300 NA non-coding upstream 96394 2730602 ~ 2762438 (+)
G935284 LOC106578716 non-coding upstream 144622 2713966 ~ 2714210 (+)
G935445 NA non-coding downstream 8152 2867515 ~ 2868595 (+)
G935447 NA non-coding downstream 10728 2870091 ~ 2870323 (+)
G935452 NA non-coding downstream 14528 2873891 ~ 2874369 (+)
G935458 NA non-coding downstream 18378 2877741 ~ 2877944 (+)
G935500 NA non-coding downstream 58547 2917910 ~ 2918709 (+)
G934640 NA other upstream 949752 1908660 ~ 1909080 (+)
G934579 NA other upstream 1031466 1826627 ~ 1827366 (+)
G934256 NA other upstream 1362818 1488076 ~ 1496014 (+)
G934169 NA other upstream 1551073 1307527 ~ 1307759 (+)
G933799 NA other upstream 1907248 949531 ~ 951584 (+)
G935846 NA other downstream 690676 3550039 ~ 3550487 (+)
G935976 NA other downstream 1121408 3980771 ~ 3981151 (+)
G935977 NA other downstream 1122488 3981851 ~ 3982198 (+)
G937051 NA other downstream 2160542 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 2283954 5143317 ~ 5144565 (+)

Expression


Co-expression Network