XLOC_028526 (scube1)


Basic Information

Item Value
gene id XLOC_028526
gene name scube1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8906893 ~ 9008851 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055338
GTGCGCAAACCAATCAGCGGCGTCCGGAGTCTCGAGCTGTGGTGCTCGCTCTGCCAGCAGCAGCAGAAAGGCTGCTTATCAAAGAAACGCACAACTGGAGAGACCCATTCACTCACAGCCTCTAACCATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGATGGGATGAACTGTATGAATAAGGACCACGGTTGTGCCCATATCTGCAGAGAAATTACCAAAGGCGGAGTGGCGTGTGAGTGCCGGCCAGGGTTTGAGCTGGCCGAAAATCAGCGCGACTGCAAATTGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTGAGAAAGATGAGGCTGCAATTGAGAGCTCTGAATTCAATACCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGTCGTCTACTTATGGAGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAGATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAGATATTGACGAGTGCTCCTTTGAGAGGACGTGTGATCACGTCTGCATCAACTACCCTGGTAGCTTTGAGTGTGTTTGCCACAAAGGCTACAGTCTCTATGGCTTCACACACTGCGGCGATATTGACGAGTGCAGCATCAATAACGGAAGCTGTGAACACGGCTGTGTGAACACACCGGGCAGTTACGAGTGTGTGTGTCCTCCTGGACAAAAGCTCCACTGGAACAAGAAAGACTGTGTTGAGGCGGTAAAATGCCTCCAGAATGGAAAACCGCCACCACGTGCTCAACTCAGCTGCACTAAGACAGGTGGAGGAGAGGTGTGTTCACTTTCCTGTCCATCAAACGCACTCTTTCTAGCAGACTCAGAAAACAGTTATACACTGAGCTGCGGTGTACCTGTCCAGCCAGGTAAAGCTCCACTGAAGAGAAACATCACAACTTCCAGCAGCAGCTCCCTGCAAACCTGCACAGAGATGCTGGCGCAGCCTGTGAAGCAGAAAGCCCGCTTTAAGATCAAAGACGCCAAGTGCCACATGAGACCCCGCAACAAGGAGAAACACAGAGACATGGGGAAGCAGGGCCTTCAGGCTGGCCAGTTCCCTTGCACAGACGACTGTCAGGTAACATTTGTGAATCTGAAGTGCGACTCTTCCAAAAAGCGCCGTAGGGGCCGGAAATCTCCCTCAAAGGAAGTCTCGCACATTACAGCAGAGTTTGAGATGGAAATGAAAGAAGAAGAAGCCTCAGaATCATGCAACTTGGACTGCGTTCGCGAGAAAACCAAACAGCGATTACAGAACGCCATGCGCACACTAAGAAAGTCCATCAGTAAGCAACAGTTCTACATCCAGTTTTCTGGCACCGCATATGAAGTTGCCCAGCATGCTTTACGACATACGACTGAAGGAGATGAAACCTGCAGTATAGGACAGGTCTTTACCGATGGGAAGTGCGTCAGCTGCGTTGTGGGAACATTTTACAGTGGAGAACAGGAACAGTGCGTCATGTGTCCTCTTGGAACCTATCAAGACAGGGAAGGCCAGCTGTCCTGCGAGCCCTGTCCCAGAACTGAAGGACAGGGCATCGCAGGAGCCAAAAACGTCTCTGAGtgcggagGTCAGTGTCCAGCCGGTCAGTTCTCTTCTGATGGTTTCCGCCCATGCCAACCATGTCAGCTGGGCACCTTCCAGCCTGAGCCAGGCCGTGTGCTGTGTTTTCCCTGTGGCGGAGGACTCATGACTAAACACACCGGCAGCACATCATTTAGAGACTGTGAAGCCAAAGTTCACTGTGCTCTTGGCCATTATTATAATGCCACCACACATCGGTGCATCCGCTGTCCAGCTGGTACCTATCAGTCTGAATCCGGACAGAACTACTGCATCACCTGCCCTGGAAACACCACTACAGATTTCGACGGCGCTAACAACGTGTCTCACTGCAAAAATCAGATATGTGGTGGAGAGCTGGGCGACTTCATGGGCTACATCGAATCTCCGAACTATCCCGGTGACTATCCATCTAATGTGGACTGCGTCTGGACCATTAACCCTCCAAACAAAAGGCGGATCCTTATTGTTGTACCAGAGATCTTCCTCCCCATCGAGGATGAGTGCGGGGATGTTCTCGTCATGAGGAAGAGTGcCCTGCCCACTTCCATTACAACTTATGAGACCTGCCAAACTTATGAGCGACCGATCGCCTTCACCTCCCGTTCACGCAAACTGTGGATCCAGTTTAAATCCAATGAGGGTAACAGTGGAAAGGGATTTCAGGTTCCATATGTCACTTATGATGAAGATTACCAGCAACTCATAGAAGACATTGTTCGAGACGGTCGACTATATGCCTCAGAAAACCATCAGGAGATATTAAAAGATAAGAAGCTGATTAAAGCTCTGTTTGACGTACTGGCTCACCCTCAAAATTACTTTAAATACACTGTGCAGGAATCAAAGGAAATGTTCCCACGTTCCTTCATCAAACTGCTACGTTCCAAAGTCTCAAGGTTTCTACGGCCGTATAAATAGAAACCCGAAACTCTGATCCACGACTTTCTTTCCTCATCTCTCTTCCACCTCTTTTTCTCCACTAGCTTTCAGAAGGCCTCACTACTGCAAGAAGATAAAGACATTTGGCCTTCTTTCTCTCTGAGATTTGTCcccttttttgtctttgtttgctATAATTTATGTGCTCGATTTTGCGAAAGCCCTTGTTGGATGTTTGatatctacagtatatatatatttgtatatgtatgtatttatatatgtgtgtgtgtttgcgtgtacaAAATATGATGTGCAAGTTTATGGCATAGTAGTaggacacaaacagacacacacagatatatattcTTGTTTCAAAAACGTCATTTTCATGCCCCTGATGTGCACAAGGGGTTtcaatatggagccagatcagtctcaaaaataagcATTTACAAATATAATTCATACGTTCTAGacaatttgtaaatacatgcAAAAACATGTATTTCATGATTCATATATAACACAAATCCAAGTCGTGAATTAAAAATTATGATTCATAAATactcaaatccaattcataaattcaaaataagaTTCATAAATactcaaatccaattcataaattaaaaatacgataaaaaatacacaaatccaatttgtaaattcaaaacacgattcaataatacacaaatccaattcgtaaattcaaaatatgcTTCAAAAATACACTAaggcaattcgtaaattcaaaatatgattcCTAAATCtaaaaatccaattcgtaaattcaaaacatgattcaaaaatacacaaatccaatttggaaattcgaaacacgattcaaaaatacactaaGGCAATTCgtaatt
>TCONS_00055339
CAAACCAATCAGCGGCGTCCGGAGTCTCGAGCTGTGGTGCTCGCTCTGCCAGCAGCAGCAGAAAGGCTGCTTATCAAAGAAACGCACAACTGGAGAGACCCATTCACTCACAGCCTCTAACCATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGATGGGATGAACTGTATGAATAAGGACCACGGTTGTGCCCATATCTGCAGAGAAATTACCAAAGGCGGAGTGGCGTGTGAGTGCCGGCCAGGGTTTGAGCTGGCCGAAAATCAGCGCGACTGCAAATTGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTGAGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAGATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAGATATTGACGAGTGCTCCTTTGAGAGGACGTGTGATCACGTCTGCATCAACTACCCTGGTAGCTTTGAGTGTGTTTGCCACAAAGGCTACAGTCTCTATGGCTTCACACACTGCGGCGATATTGACGAGTGCAGCATCAATAACGGAAGCTGTGAACACGGCTGTGTGAACACACCGGGCAGTTACGAGTGTGTGTGTCCTCCTGGACAAAAGCTCCACTGGAACAAGAAAGACTGTGTTGAGGCGGTAAAATGCCTCCAGAATGGAAAACCGCCACCACGTGCTCAACTCAGCTGCACTAAGACAGGTGGAGGAGAGGTGTGTTCACTTTCCTGTCCATCAAACGCACTCTTTCTAGCAGACTCAGAAAACAGTTATACACTGAGCTGCGGTGTACCTGTCCAGCCAGGTAAAGCTCCACTGAAGAGAAACATCACAACTTCCAGCAGCAGCTCCCTGCAAACCTGCACAGAGATGCTGGCGCAGCCTGTGAAGCAGAAAGCCCGCTTTAAGATCAAAGACGCCAAGTGCCACATGAGACCCCGCAACAAGGAGAAACACAGAGACATGGGGAAGCAGGGCCTTCAGGCTGGCCAGTTCCCTTGCACAGACGACTGTCAGGTAACATTTGTGAATCTGAAGTGCGACTCTTCCAAAAAGCGCCGTAGGGGCCGGAAATCTCCCTCAAAGGAAGTCTCGCACATTACAGCAGAGTTTGAGATGGAAATGAAAGAAGAAGAAGCCTCAGaATCATGCAACTTGGACTGCGTTCGCGAGAAAACCAAACAGCGATTACAGAACGCCATGCGCACACTAAGAAAGTCCATCAGTAAGCAACAGTTCTACATCCAGTTTTCTGGCACCGCATATGAAGTTGCCCAGCATGCTTTACGACATACGACTGAAGGAGATGAAACCTGCAGTATAGGACAGGTCTTTACCGATGGGAAGTGCGTCAGCTGCGTTGTGGGAACATTTTACAGTGGAGAACAGGAACAGTGCGTCATGTGTCCTCTTGGAACCTATCAAGACAGGGAAGGCCAGCTGTCCTGCGAGCCCTGTCCCAGAACTGAAGGACAGGGCATCGCAGGAGCCAAAAACGTCTCTGAGtgcggagGTCAGTGTCCAGCCGGTCAGTTCTCTTCTGATGGTTTCCGCCCATGCCAACCATGTCAGCTGGGCACCTTCCAGCCTGAGCCAGGCCGTGTGCTGTGTTTTCCCTGTGGCGGAGGACTCATGACTAAACACACCGGCAGCACATCATTTAGAGACTGTGAAGCCAAAGTTCACTGTGCTCTTGGCCATTATTATAATGCCACCACACATCGGTGCATCCGCTGTCCAGCTGGTACCTATCAGTCTGAATCCGGACAGAACTACTGCATCACCTGCCCTGGAAACACCACTACAGATTTCGACGGCGCTAACAACGTGTCTCACTGCAAAAATCAGATATGTGGTGGAGAGCTGGGCGACTTCATGGGCTACATCGAATCTCCGAACTATCCCGGTGACTATCCATCTAATGTGGACTGCGTCTGGACCATTAACCCTCCAAACAAAAGGCGGATCCTTATTGTTGTACCAGAGATCTTCCTCCCCATCGAGGATGAGTGCGGGGATGTTCTCGTCATGAGGAAGAGTGcCCTGCCCACTTCCATTACAACTTATGAGACCTGCCAAACTTATGAGCGACCGATCGCCTTCACCTCCCGTTCACGCAAACTGTGGATCCAGTTTAAATCCAATGAGGGTAACAGTGGAAAGGGATTTCAGGTTCCATATGTCACTTATGATGAAGATTACCAGCAACTCATAGAAGACATTGTTCGAGACGGTCGACTATATGCCTCAGAAAACCATCAGGAGATATTAAAAGATAAGAAGCTGATTAAAGCTCTGTTTGACGTACTGGCTCACCCTCAAAATTACTTTAAATACACTGTGCAGGAATCAAAGGAAATGTTCCCACGTTCCTTCATCAAACTGCTACGTTCCAAAGTCTCAAGGTTTCTACGGCCGTATAAATAGAAACCCGAAACTCTGATCCACGACTTTCTTTCCTCATCTCTCTTCCACCTCTTTTTCTCCACTAGCTTTCAGAAGGCCTCACTACTGCAAGAAGATAAAGACATTTGGCCTTCTTTCTCTCTGAGATTTGTCcccttttttgtctttgtttgctATAATTTATGTGCTCGATTTTGCGAAAGCCCTTGTTGGATGTTTGatatctacagtatatatatatttgtatatgtatgtatttatatatgtgtgtgtgtttgcgtgtacaAAATATGATGTGCAAGTTTATGGCATAGTAGTaggacacaaacagacacacacagatatatattcTTGTTTCAAAAACGTCATTTTCATGCCCCTGATGTGCACAAGGGGTTtcaatatggagccagatcagtctcaaaaataagcATTTACAAATATAATTCATACGTTCTAGacaatttgtaaatacatgcAAAAACATGTATTTCATGATTCATATATAACACAAATCCAAGTCGTGAATTAAAAATTATGATTCATAAATactcaaatccaattcataaattcaaaataagaTTCATAAATactcaaatccaa
>TCONS_00058064
ATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGCCTCCACAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGATGGGATGAACTGTATGAATAAGGACCACGGTTGTGCCCATATCTGCAGAGAAATTACCAAAGGCGGAGTGGCGTGTGAGTGCCGGCCAGGGTTTGAGCTGGCCGAAAATCAGCGCGACTGCAAATTGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTGAGAAAGATGAGGCTGCAATTGAGAGCTCTGAATTCAATACCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGTCGTCTACTTATGGAGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAGATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAGaaaaatgtttaggcTGCTCTTATAAAAGACTAACCGGTTTTATGCCACTTTTTGTGCCTTTATCCCATTTTTGTATCTTTGACActctttattcaattcaattcaatttatctttaattcATATTGACGAGTGCAGCATCAATAACGGAAGCTGTGAACACGGCTGTGTGAACACACCGGGCAGTTACGAGTGTGTGTGTCCTCCTGGACAAAAGCTCCACTGGAACAAGAAAGACTGTGTTGAGGCGGTAAAATGCCTCCAGAATGGAAAACCGCCACCACGTGCTCAACTCAGCTGCACTAAGACAGGTGGAGGAGAGGTGTGTTCACTTTCCTGTCCATCAAACGCACTCTTTCTAGCAGACTCAGAAAACAGTTATACACTGAGCTGCGGTGTACCTGTCCAGCCAGGTAAAGCTCCACTGAAGAGAAACATCACAACTTCCAGCAGCAGCTCCCTGCAAACCTGCACAGAGATGCTGGCGCAGCCTGTGAAGCAGAAAGCCCGCTTTAAGATCAAAGACGCCAAGTGCCACATGAGACCCCGCAACAAGGAGAAACACAGAGACATGGCTGGCCAGTTCCCTTGCACAGACGACTGTCAGGTAACATTTGTGAATCTGAAGTGCGACTCTTCCAAAAAGCGCCGTAGGGGCCGGAAATCTCCCTCAAAGGAAGTCTCGCACATTACAGCAGAGTTTGAGATGGAAATGAAAGAAGAAGAAGCCTCAGaATCATGCAACTTGGACTGCGTTCGCGAGAAAACCAAACAGCGATTACAGAACGCCATGCGCACACTAAGAAAGTCCATCAGTAAGCAACAGTTCTACATCCAGTTTTCTGGCACCGCATATGAAGTTGCCCAGCATGCTTTACGACATACGACTGAAGGAGATGAAACCTGCAGTATAGGACAGGTCTTTACCGATGGGAAGTGCGTCAGCTGCGTTGTGGGAACATTTTACAGTGGAGAACAGGAACAGTGCGTCATGTGTCCTCTTGGAACCTATCAAGACAGGGAAGGCCAGCTGTCCTGCGAGCCCTGTCCCAGAACTGAAGGACAGGGCATCGCAGGAGCCAAAAACGTCTCTGAGtgcggagGTCAGTGTCCAGCCGGTCAGTTCTCTTCTGATGGTTTCCGCCCATGCCAACCATGTCAGCTGGGCACCTTCCAGCCTGAGCCAGGCCGTGTGCTGTGTTTTCCCTGTGGCGGAGGACTCATGACTAAACACACCGGCAGCACATCATTTAGAGACTGTGAAGCCAAAGTTCACTGTGCTCTTGGCCATTATTATAATGCCACCACACATCGGTGCATCCGCTGTCCAGCTGGTACCTATCAGTCTGAATCCGGACAGAACTACTGCATCACCTGCCCTGGAAACACCACTACAGATTTCGACGGCGCTAACAACGTGTCTCACTGCAAAAATCAGATATGTGGTGGAGAGCTGGGCGACTTCATGGGCTACATCGAATCTCCGAACTATCCCGGTGACTATCCATCTAATGTGGACTGCGTCTGGACCATTAACCCTCCAAACAAAAGGCGGATCCTTATTGTTGTACCAGAGATCTTCCTCCCCATCGAGGATGAGTGCGGGGATGTTCTCGTCATGAGGAAGAGTGcCCTGCCCACTTCCATTACAACTTATGAGACCTGCCAAACTTATGAGCGACCGATCGCCTTCACCTCCCGTTCACGCAAACTGTGGATCCAGTTTAAATCCAATGAGGGTAACAGTGGAAAGGGATTTCAGGTTCCATATGTCACTTATGATGAAGATTACCAGCAACTCATAGAAGACATTGTTCGAGACGGTCGACTATATGCCTCAGAAAACCATCAGGAGATATTAAAAGATAAGAAGCTGATTAAAGCTCTGTTTGACGTACTGGCTCACCCTCAAAATTACTTTAAATACACTGTGCAGGAATCAAAGGAAATGTTCCCACGTTCCTTCATCAAACTGCTACGTTCCAAAGTCTCAAGGTTTCTACGGCCGTATAAATAG
>TCONS_00058065
GCTTATCAAAGAAACGCACAACTGGAGAGACCCATTCACTCACAGCCTCTAACCATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGGTGagtctatctatctctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtcttctgtctgtctgtctgtctttctgtctgtctatctatctatctatcgttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctctgtctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcgttctattatTGTATCTACAGCATCTACCAAtcccaaaacaaaaaaat
>TCONS_00055340
GCTTATCAAAGAAACGCACAACTGGAGAGACCCATTCACTCACAGCCTCTAACCATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGGTGagtctatctatctctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctttctgtctgtctatctatctatctatcgttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcgttctattatTGTATCTACAGCATCTACCAAtcccaaaacaaaaaaa

Function

symbol description
scube1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050302-78 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

Ensembl:

ensembl_id ENSDARG00000063097

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055338 False 4038 mRNA 0.46 23 8906893 9008851
TCONS_00055339 False 3689 mRNA 0.48 22 8907147 9008846
TCONS_00058064 False 3069 lncRNA 0.49 24 8907729 9008724
TCONS_00058065 False 978 lncRNA 0.40 6 8975117 9008778
TCONS_00055340 True 1068 lncRNA 0.41 4 8975118 9008778

Neighbor

gene id symbol gene type direction distance location
XLOC_028525 NA coding downstream 1440 8904291 ~ 8905453 (-)
XLOC_028524 mpped1 coding downstream 3653 8849816 ~ 8903240 (-)
XLOC_028523 pnpla3 coding downstream 111643 8780179 ~ 8795250 (-)
XLOC_028522 ttll12 coding downstream 127704 8739093 ~ 8779189 (-)
XLOC_028521 BX842699.1 coding downstream 171302 8709082 ~ 8735591 (-)
XLOC_028527 NA coding upstream 39455 9048306 ~ 9050945 (-)
XLOC_028528 si:dkey-48p11.3 coding upstream 42737 9051588 ~ 9054947 (-)
XLOC_028529 chst11 coding upstream 94331 9103182 ~ 9173552 (-)
XLOC_028530 hcfc2 coding upstream 175630 9184481 ~ 9196291 (-)
XLOC_028531 avpr1ab coding upstream 198871 9207722 ~ 9214288 (-)
XLOC_028520 BX649324.2 non-coding downstream 268264 8634704 ~ 8638629 (-)
XLOC_028518 BX649324.1 non-coding downstream 318985 8587787 ~ 8587908 (-)
XLOC_028517 NA non-coding downstream 686902 8219461 ~ 8219991 (-)
XLOC_028533 NA non-coding upstream 379967 9388818 ~ 9389648 (-)
XLOC_028534 NA non-coding upstream 505697 9514548 ~ 9521942 (-)
XLOC_028540 BX901962.1 non-coding upstream 640432 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 1337887 10346738 ~ 10348612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_00885041_00912917 SCUBE1 coding CI01000066 null 884544 ~ 912917 (-)