XLOC_028527


Basic Information

Item Value
gene id XLOC_028527
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9048306 ~ 9050945 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058066
aaaaaatcttgGGTATGAGCATGAATTAAGTTTTTTTTGCTGAACAATCTGTTTAATAGGGTTGCATTAATTATAATATCAAGGAGCATTTTTAGTCTagcaaaatattgtcttgttttaagaaatatgtcAAAACTgagtttgtccttaaaacaagcaaaataatcttgcggcaaaaggaaaaacaagattattttgcttgttttaagggtaAACTCATTTACTTtgccaaataatttttaaaaacaattcaacATTTTATGCTtttctataaaatgcttcttgatttagagTTTAAATATTCGGAGtagaaaataatcaaaaatcaaagtaagaaaagcattgttAGAGTGCAATAACCTCACTGGCAAAGATATagaggtatatatatattttcaatcaaGAAAAGCTAAGTTTTTGTCATTTCtgttgtttattgtaaaaacaactCTCCTTAAATGTTTGTTTGCAGTTGATATAAAGTTTAAATACTGTTGCATATGAAGACTATTTGGCAATATGACACTTCCAGTGGGACCGACAGCTTATACAGAACCTCAAACTcccaataaaataaattgtttgctcTTGTAAAACAAAATTACGATGGttcagacaaaacaaacacatattttcaGTCATCCTAACAAGAATGTCAGAAACAGTTCACATTGTACTGTACTCAAGTTACTTCTCCATATTTTCCCCCAAGAATGTaccactttttttgtgtgttgtacaaaataaataacttCTTTTAAAAGAGAATAGTGTTTATATCATTTCCCTTTCCACATTTCCAATCGTCTGTCTGGAatgcaaaattaaatatataaaataagacaAATCGTCGTATCctctaataaaatatatacagttatgcTAATAAAAACAATTGTCATGAAAATGCTATGCATATTAAAAAATCCTTGGGATGTACAAATATGCTGATACAGATTTCATAAAGTGGCAGTGATGTGACATGGCTTGAAAATATGAGACCACAGACAATAAAAGTAAAGAATAGCTTAAAattttttcttaattgatataaattatattttataagtttGAGGTCAGAaagacttatttaaaataaaaattaatacttttaatacCCAAGGATACATTAAATAGATGAAAAGTGAAAAAACACTGTAATAagtgattatttactttaaaaagtgagaaaacttataaactttatttaaaaaagtgagcaaatCTATTGCAACTTGTAATAAATTTAACTTGTAataaatttacttaatttattatgtaaagtcaactaattgttttaaaagcacaGGTTTATACACTTATTTTAggtaaaaacaaatcatttttacagtgtaccttcataatgttataaatatttatatttcaattaGTTTTAGCTTTATATTCAGCttttaagacaaaaacatgaTGGTttccttaaaaatgtttttctacTTTGATAAACATTACTGAGCAAAACATTAATATGATTAATGCATATTaatgtgatttctgaaagatcgtGTAATCAAAGCCTAGAGTAATGATGCTTTtgaaacacagaaataaattacattaaatattactGCTTGTCGATCATATATATGCTCTCCTGATCATAAGGGCGTCTTTAAAAAcacttactgaccccaaacttttacgTACAGTTGTGTAAATGAATGATATGTGATACGATACGTGAACGATTGAACAATTTCTGCAGCATCAAGCCAACAGTTTCCCAATTAACTGCTATTGTCATCATGATTGTGATACTGTTGCGGTTAATAAACTCAAATAACTCTATTTCACTTTATCACTGTGACATATTTCAGTGTTCGCAAGATAAATAATGATTTGTGACAGTTTCTTGGATCCACTTGGGGGTCTGTtgccatttctttaaaaaaattaaccagCATTTTGACACAGGCCAGTCATTACTTGTCCCTCCAAGCATTATCCAGGAAAAAAAAAGCGATATTATACAAAATGTAGGCACATCAGTGTAGTTTTGGCAGGAAATGCTCTGGGTTTCCTATCAAACCTGTTTCAAGTCAAATGGGGCTGCGGTAAAAGGCTGTTTGCAGGAAATTGTTACATTTTGGTTAAAGATTACTAAAACAAACTGTTTTTT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058066 True 2137 lncRNA 0.29 2 9048306 9050945

Neighbor

gene id symbol gene type direction distance location
XLOC_028526 scube1 coding downstream 39455 8906893 ~ 9008851 (-)
XLOC_028525 NA coding downstream 142853 8904291 ~ 8905453 (-)
XLOC_028524 mpped1 coding downstream 145066 8849816 ~ 8903240 (-)
XLOC_028523 pnpla3 coding downstream 253056 8780179 ~ 8795250 (-)
XLOC_028522 ttll12 coding downstream 269117 8739093 ~ 8779189 (-)
XLOC_028528 si:dkey-48p11.3 coding upstream 643 9051588 ~ 9054947 (-)
XLOC_028529 chst11 coding upstream 52237 9103182 ~ 9173552 (-)
XLOC_028530 hcfc2 coding upstream 133536 9184481 ~ 9196291 (-)
XLOC_028531 avpr1ab coding upstream 156777 9207722 ~ 9214288 (-)
XLOC_028532 C4H12orf66 coding upstream 288122 9339067 ~ 9350585 (-)
XLOC_028521 BX842699.1 non-coding downstream 312715 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 non-coding downstream 409677 8634704 ~ 8638629 (-)
XLOC_028518 BX649324.1 non-coding downstream 460398 8587787 ~ 8587908 (-)
XLOC_028517 NA non-coding downstream 828315 8219461 ~ 8219991 (-)
XLOC_028533 NA non-coding upstream 337873 9388818 ~ 9389648 (-)
XLOC_028534 NA non-coding upstream 463603 9514548 ~ 9521942 (-)
XLOC_028540 BX901962.1 non-coding upstream 598338 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 1295793 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1610616 10661561 ~ 10661677 (-)

Expression


Co-expression Network