G935840


Basic Information

Item Value
gene id G935840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3535009 ~ 3539585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1067168
AAATGGACAGAACTGATGTGGATGAGGTTATCTGTCGTGTAAATATCCTGCCGTTTATTGACGGAAATGGACAGAGCTGATGTGGATACCCATAACACATTTCTTCAGGTGACTTGTGTTTAtagccaggagtttttcctgccTGACATCACCAGAAAAAAAAACTATGGGACATAGACTGGTTTTTCCTGTACTGCTTATAAGCATGTTGTAAATAGCTTTGTGATGTAATTCAGTGTTATAACCAGCCTTTATAAACACTGTGGCTAGTTAGTGGTTATGTAAACGTCACTATGTAGTAGCTAGATGACAGAGGGTTAAAACCAGCCTTTATAAACACTGTGGCTAGTTAATGGTTATGTAAACGTCACTATGTAGTAGCTAGATGACAGAGTGTTATAACCAGCCTTTATAAACACGGTGGCTAGTTAATGGTTATGTAAACATGATTATGTAGTAGCTAGCTGACAGAGTGTTAAAACCAGCCTTTATAAACACGGTGGCTAGTTAATGGTTATGTAAACGTCACTATGTAGTAGCTAGCTGACAGACATGCTGTGGTATTGATCAGTAGAGGTGATCTGATTTCATTGTCCTGGAATAGCCAGAGAGGATCCAGagagaggaaaccaactgacagaggagagggagagaaagaggagaggaaaccaactgacagaggagagggagagaaagaggagaggaaaccaactgacagaggagagggagagaaagaggagaggaaaccaactgacggaggagaggaaaccaactgacggaggagaggaaaccaactgacggaggagagggagagaaagaggagaggaaaccaactgacggaggagaggaaacaaactgacggaggagaggaaaccaactgacggaggagaggaaaccaactgacgGAGGAGAGGCAAACcaactgacagaggagaggaaaccaactgacggaggagagggagagaaagaggagaggaaaccaactgacggaggagagggagagaaagaggagaggaaaccaactgacggaggagaggaaaccaactgacggaggagaggaaaccaactgacggaggagaggaaaccaactgacggaagagagggagagaaagaggagaggcaaccaactgaaggaggagaggaaaccaactgacggaggagaggaaaccaactgacggaggagagggagagaaagaggagaggaaactaactgacggaggagagggagagaaagaggagaggaaaccaactgacggaggagagggagataaagaggagaggaaaccaactgacggaggagagggagagaaagagtagaggaaATGGGGATGAGAATGGATTCAGTCAAATGGAGAGAGGAGTTCCTTTGCTGAGCAGGAGAAGGAGGTCAAGGGAGGGACGGATAGATTGGGGAGTCTGGATGGACAGAAGTAATGGGATAACAGAAAGTagaggacatacacacacacacacacacacacccaacacacacacacacccaacacacacacacacacatacacacacacacacccaacacaaacacacacacacacacacccacacccaacaaacacacacacacacacacccaacacaaacacacacgcccaacacaaacacacacacacgcccaacacaaacacacacacacacacacccaacacaagcacacacacacacacccaacacaagcacacaaacacacacacacacacacacacacccaacacaaacacacacacacacacccaacacaaacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1067168 True 1766 lncRNA 0.47 4 3535009 3539585

Neighbor

gene id symbol gene type direction distance location
LOC118937434 NA coding upstream 132142 3402052 ~ 3402867 (+)
LOC118937290 NA coding upstream 285618 3247826 ~ 3249391 (+)
plod2 LOC106579751 coding upstream 1004035 2419339 ~ 2530974 (+)
si:ch73-206p6.1 LOC106579752 coding upstream 1147417 2376701 ~ 2387592 (+)
LOC110535167 LOC106579754 coding upstream 1679440 1839051 ~ 1855581 (+)
LOC110535177 tceb1 coding downstream 94355 3633940 ~ 3636886 (+)
flj11011l ube2w coding downstream 113210 3652795 ~ 3676466 (+)
stau2 stau2 coding downstream 144289 3683874 ~ 3961133 (+)
LOC110536525 rpl7 coding downstream 478607 4018192 ~ 4024376 (+)
LOC118937477 NA coding downstream 480229 4019814 ~ 4019908 (+)
G935838 NA non-coding upstream 4120 3529737 ~ 3530889 (+)
G935829 NA non-coding upstream 17480 3516595 ~ 3517529 (+)
G935800 NA non-coding upstream 80530 3454203 ~ 3454479 (+)
G935798 NA non-coding upstream 82182 3452587 ~ 3452827 (+)
G935783 NA non-coding upstream 109805 3424728 ~ 3425204 (+)
G935849 NA non-coding downstream 16861 3556446 ~ 3556786 (+)
G935887 NA non-coding downstream 122734 3662319 ~ 3663078 (+)
G935896 NA non-coding downstream 155830 3695415 ~ 3695781 (+)
G935924 NA non-coding downstream 242914 3782499 ~ 3782780 (+)
G935925 NA non-coding downstream 245117 3784702 ~ 3864827 (+)
G934640 NA other upstream 1625929 1908660 ~ 1909080 (+)
G934579 NA other upstream 1707643 1826627 ~ 1827366 (+)
G934256 NA other upstream 2038995 1488076 ~ 1496014 (+)
G934169 NA other upstream 2227250 1307527 ~ 1307759 (+)
G933799 NA other upstream 2583425 949531 ~ 951584 (+)
G935846 NA other downstream 10454 3550039 ~ 3550487 (+)
G935976 NA other downstream 441186 3980771 ~ 3981151 (+)
G935977 NA other downstream 442266 3981851 ~ 3982198 (+)
G937051 NA other downstream 1480320 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 1603732 5143317 ~ 5144565 (+)

Expression


Co-expression Network