G935887


Basic Information

Item Value
gene id G935887
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3662319 ~ 3663078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1067234
tcactactgtagtggctctggataagagagtctgttaaatgactcactattgtagggactctggataagagagtctgctaaatgactcactactgtagtggctctggataagagagtctgctaaatgactcactactgtagtgtctctggataagagagtctgttaaatgactcactactgtagtgtctggatcagagagtctgttaaatgactcactattgtagtgtctggataagagagtctgctaaatgactcactactgtagtgtctctggataagagagtctgctaaatgactcactattgtagtgtctggataagagagtctgctaaatgactcgcTACTGTAGtgtctggatcagagagtctgctaaatgactcactactgtagtgtctctggataagagagtctgctaaatgactcactattgtagtgtctggataagagtctgttaaatgacacaAATGCAGAAGTGGATAGACTGAATGCTGCTGAGCAGAACAAGCTCACTAGTAGTTTCAGCTGTTCTGCATTGCATAAGGAAACACACTCTTCTTTCctacctacctgaatttgtccaacatGAAACTTTGTATTTTCATTGCGAAACATATTGCAtcaatgaatacaccccagatctCTTGTCTGTCAAGAATGGTATGAGTCACTGGaatgagaaccttccagaacccGTTGAGCTGGATCTTATCCTTGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1067234 True 719 lncRNA 0.41 2 3662319 3663078

Neighbor

gene id symbol gene type direction distance location
LOC110535177 tceb1 coding upstream 25433 3633940 ~ 3636886 (+)
jph1a jph1b coding upstream 46007 3523557 ~ 3616312 (+)
LOC118937434 NA coding upstream 259452 3402052 ~ 3402867 (+)
LOC118937290 NA coding upstream 412928 3247826 ~ 3249391 (+)
plod2 LOC106579751 coding upstream 1131345 2419339 ~ 2530974 (+)
stau2 stau2 coding downstream 20796 3683874 ~ 3961133 (+)
LOC110536525 rpl7 coding downstream 355114 4018192 ~ 4024376 (+)
LOC118937477 NA coding downstream 356736 4019814 ~ 4019908 (+)
LOC118937478 NA coding downstream 357402 4020480 ~ 4020575 (+)
LOC118937479 NA coding downstream 358162 4021240 ~ 4021332 (+)
G935849 NA non-coding upstream 105533 3556446 ~ 3556786 (+)
G935840 NA non-coding upstream 122734 3535009 ~ 3539585 (+)
G935838 NA non-coding upstream 131430 3529737 ~ 3530889 (+)
G935829 NA non-coding upstream 144790 3516595 ~ 3517529 (+)
G935800 NA non-coding upstream 207840 3454203 ~ 3454479 (+)
G935896 NA non-coding downstream 32337 3695415 ~ 3695781 (+)
G935924 NA non-coding downstream 119421 3782499 ~ 3782780 (+)
G935925 NA non-coding downstream 121624 3784702 ~ 3864827 (+)
G935929 NA non-coding downstream 131212 3794290 ~ 3795252 (+)
G935932 NA non-coding downstream 140178 3803256 ~ 3805084 (+)
G935846 NA other upstream 111832 3550039 ~ 3550487 (+)
G934640 NA other upstream 1753239 1908660 ~ 1909080 (+)
G934579 NA other upstream 1834953 1826627 ~ 1827366 (+)
G934256 NA other upstream 2166305 1488076 ~ 1496014 (+)
G934169 NA other upstream 2354560 1307527 ~ 1307759 (+)
G935976 NA other downstream 317693 3980771 ~ 3981151 (+)
G935977 NA other downstream 318773 3981851 ~ 3982198 (+)
G937051 NA other downstream 1356827 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 1480239 5143317 ~ 5144565 (+)
G937237 NA other downstream 1841626 5504704 ~ 5505329 (+)

Expression


Co-expression Network