XLOC_002853 (lim2.1)


Basic Information

Item Value
gene id XLOC_002853
gene name lim2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29896275 ~ 29903165 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005284
CTTTCTATTCAACCGCTAAACGCTAGTGCTAAGAGCTGCTGGAAAGCTGCCTGTACAGCCATTATTGGGCCCTGGCGTATATTATTTAGACTTCATTTAGAGGTTTGATAAAGTCTGTCTGTAGGTGCAGAATGTACAGCTTCTTGGGAGGAGGGCTGTTTTGTGCAGGAGTGGGCAATATACTCCTGATTGTTTCCACAGCAACAGATTATTGGATGCAGTACCGTCATTCAAACAACTACATGCATCAGGGACTGTGGAGATACTGCACGCCTGGAAAATGCTTCACACACACTGACAGCATTGCATACTGGGATGCTACACGAGCATTCATGATCTTGTCTCTTTTGGCCTGCTTCATTGGCATCATCATCGGTATTATGGCCTTCATCCATTACTCCTCCTTTGACAGGTTTGATAAAACCTTTGCTGCAGGCATTCTGTTCTTCATCTCTTGCTTTTTTGTGTTTCTGGCCATGGCTGTCTACACGGGAGTCACAATAAATTACTATGGTAAACGCTATGGTAATTGGAGGTTCTCCTGGTCTTACATCATTGGCTGGGTGTCTGTTGTGCTCACTTTCTTTTCAGGAATGTTCTACATGTGTGCATACCGGATGCATGAATGCCCCAGAAGCTCAAATCCTCATTAGAAGATGAAGCTTTATTATCTTCAATGATGGAAACCACTTCAGTACCATTAAAAAATAGAACAAAGCAAATTGTCAATAAAGAATAGTAGATAGTATGTGTGAACTCTT
>TCONS_00005285
aGTCTGTCTGTAGGTGCAGAATGTACAGCTTCTTGGGAGGAGGGCTGTTTTGTGCAGGAGTGGGCAATATACTCCTGATTGTTTCCACAGCAACAGATTATTGGATGCAGTACCGTCATTCAAACAACTACATGCATCAGGGACTGTGGAGATACTGCACGCCTGGAAAATGCTTCACACACACTGACAGCATTGCATACTGGGATGCTACACGAGCATTCATGATCTTGTCTCTTTTGGCCTGCTTCATTGGCATCATCATCGGTATTATGGCCTTCATCCATTACTCCTCCTTTGACAGGTTTGATAAAACCTTTGCTGCAGGCATTCTGTTCTTCATCTCTTGCTTTTTTGTGTTTCTGGCCATGGCTGTCTACACGGGAGTCACAATAAATTACTATGGTAAACGCTATGGTAATTGGAGGTTCTCCTGGTCTTACATCATTGGCTGGGTGTCTGTTGTGCTCACTTTCTTTTCAGGAATGTTCTACATGTGTGCATACCGGATGCATGAATGCCCCAGAAGCTCAAATCCTCATTAG

Function

symbol description
lim2.1 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-398 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000068974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005284 False 761 mRNA 0.42 5 29896275 29903165
TCONS_00005285 True 542 mRNA 0.45 4 29896383 29900546

Neighbor

gene id symbol gene type direction distance location
XLOC_002852 bsx coding downstream 3789 29890535 ~ 29892486 (-)
XLOC_002851 zpr1 coding downstream 64331 29820172 ~ 29831944 (-)
XLOC_002850 hist2h2l coding downstream 79808 29815644 ~ 29816467 (-)
XLOC_002849 si:ch73-261i21.5 coding downstream 87170 29793817 ~ 29809105 (-)
XLOC_002848 vps11 coding downstream 127719 29751029 ~ 29768556 (-)
XLOC_002854 CT737197.1 coding upstream 627978 30531143 ~ 30531257 (-)
XLOC_002855 opcml coding upstream 714661 30617826 ~ 30785501 (-)
XLOC_002856 panx3 coding upstream 1094073 30997238 ~ 31016806 (-)
XLOC_002857 pknox2 coding upstream 1116442 31019607 ~ 31220558 (-)
XLOC_002858 NA coding upstream 1359687 31262852 ~ 31295006 (-)
XLOC_002845 CU861448.1 non-coding downstream 188093 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 405188 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 758271 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 972642 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 non-coding downstream 974024 28922135 ~ 28922251 (-)
XLOC_002862 NA non-coding upstream 2174646 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2313248 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 2681520 32584685 ~ 32591462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_14381274_14385770 LIM2.1 coding CI01000304 null 14380998 ~ 14385770 (-)
bowfin (Amia calva) AMCG00004373 lim2.1,LOC105900331,LOC107579014 coding CM030121.1 CM030121.1 44746710 ~ 44804158 (-)