G935999


Basic Information

Item Value
gene id G935999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4031559 ~ 4034285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1067366
TCTTTATTTAACAGAATATTTCACGAACACATTCGAGTATCTCCTTCCTGTGTACAGACAAGATGTGACGTTCCAAAATGAGAGATGACTACTTTACAATAACACAATTGTTATTTTGTATTGTCCCTATTGCAGAAATAAATACACTgtgaaatatataaaataaacacAAAGACATTTTTATTAAATGTTGGACCAATTTTTCCATTTCTATTGAACAATTTGTTCAGATCGTTGTTTCTTTAGCCACTGATAACTAGAAGGATAAATggttttgtaaaaaaataataaactaAAGTTGAAATACAAGTTAAGCTGCTATTGTCCACAGAAAGATATATAGCTCCCTCTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACCGGTTAATGGCATTGAAGCCTTGTGTTAAGAAAGGCCGGGATACAACCCAGTTTCAGGTTGAACACAATGCAGCTTTTTTAAAACGTTCTCGTGTTTGTTTATGGAGAGTCATGGTAAACCCGGGCATATTTCCACTCAAATGGGACATCGTCTCCCTCGGATTGAATCACAGCCTTAAacttactctctc
>TU1067367
TCTTTATTTAACAGAATATTTCACGAACACATTCGAGTATCTCCTTCCTGTGTACAGACAAGATGTGACGTTCCAAAATGAGAGATGACTACTTTACAATAACACAATTGTTATTTTGTATTGTCCCTATTGCAGAAATAAATACACTgtgaaatatataaaataaacacAAAGACATTTTTATTAAATGTTGGACCAATTTTTCCATTTCTATTGAACAATTTGTTCAGATCGTTGTTTCTTTAGCCACTGATAACTAGAAGGATAAATggttttgtaaaaaaataataaactaAAGTTGAAATACAAGTTAAGCTGCTATTGTCCACAGAAAGATATATAGCTCCCTCTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACTGGTAGTAATATCATGCCAGCTACTGGTG
>TU1067368
TCTTTATTTAACAGAATATTTCACGAACACATTCGAGTATCTCCTTCCTGTGTACAGACAAGATGTGACGTTCCAAAATGAGAGATGACTACTTTACAATAACACAATTGTTATTTTGTATTGTCCCTATTGCAGAAATAAATACACTgtgaaatatataaaataaacacAAAGACATTTTTATTAAATGTTGGACCAATTTTTCCATTTCTATTGAACAATTTGTTCAGATCGTTGTTTCTTTAGCCACTGATAACTAGAAGGATAAATggttttgtaaaaaaataataaactaAAGTTGAAATACAAGTTAAGCTGCTATTGTCCACAGAAAGATATATAGCTCCCTCTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACCGGTTAATGGCATTGAAGCCTTGTGTTAAGAAAGGCCGGGATACAACCCAGTTTCAGGTTGAACACAATGCAGCTTTTTTAAAACGTTCTCGTGTTTGTTTATGGAGAGTCATGGTAAACCCGGGCATATTTCCACTCAAATGGGACATCGTCTCCCTCGGATTGAATCACAGCCTTAAacttactctctc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1067366 False 1027 lncRNA 0.40 2 4031559 4034285
TU1067367 False 729 lncRNA 0.38 2 4031559 4033171
TU1067368 True 687 lncRNA 0.37 3 4031559 4034285

Neighbor

gene id symbol gene type direction distance location
LOC110536525 rpl7 coding upstream 7183 4018192 ~ 4024376 (+)
LOC118937480 NA coding upstream 7867 4023597 ~ 4023692 (+)
LOC118937479 NA coding upstream 10227 4021240 ~ 4021332 (+)
LOC118937478 NA coding upstream 10984 4020480 ~ 4020575 (+)
LOC118937477 NA coding upstream 11651 4019814 ~ 4019908 (+)
LOC118937460 NA coding downstream 75127 4109412 ~ 4117403 (+)
LOC110536527 trpa1 coding downstream 457483 4491768 ~ 4568591 (+)
LOC118937435 msc coding downstream 549331 4583616 ~ 4586582 (+)
eya1 LOC106590661 coding downstream 785460 4819745 ~ 4956185 (+)
LOC118937293 NA coding downstream 924759 4959044 ~ 4963664 (+)
G935998 rdh10 non-coding upstream 17561 4012766 ~ 4013998 (+)
G935989 NA non-coding upstream 34215 3994999 ~ 3997344 (+)
G935984 NA non-coding upstream 39573 3991779 ~ 3991986 (+)
G935978 NA non-coding upstream 46343 3984943 ~ 3985216 (+)
G935975 NA non-coding upstream 55650 3975620 ~ 3975909 (+)
G936007 NA non-coding downstream 1403 4035688 ~ 4035976 (+)
G936361 NA non-coding downstream 33325 4067610 ~ 4072748 (+)
G936387 NA non-coding downstream 88440 4122725 ~ 4123116 (+)
G936392 NA non-coding downstream 97436 4131721 ~ 4131920 (+)
G936412 NA non-coding downstream 153675 4187960 ~ 4188162 (+)
G935977 NA other upstream 49361 3981851 ~ 3982198 (+)
G935976 NA other upstream 50408 3980771 ~ 3981151 (+)
G935846 NA other upstream 481072 3550039 ~ 3550487 (+)
G934640 NA other upstream 2122479 1908660 ~ 1909080 (+)
G934579 NA other upstream 2204193 1826627 ~ 1827366 (+)
G937051 NA other downstream 985620 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 1109032 5143317 ~ 5144565 (+)
G937237 NA other downstream 1470419 5504704 ~ 5505329 (+)
G937889 NA other downstream 2087299 6121584 ~ 6122269 (+)
G938723 NA other downstream 2984866 7019151 ~ 7021424 (+)

Expression


Co-expression Network