XLOC_028533


Basic Information

Item Value
gene id XLOC_028533
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9388818 ~ 9389648 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058067
tttttttcCACAGTGTTATATTAACCTTTATGACTTAAGTTAATTTTGAAAACTGACCGTTACAAAAACAAACTTTGAAACATACAAACATGTGACAGCTATAAACATCGTCCTTCTGACATCAAGCCAGTGCAACATTTCATCTGTTCGGGCAGAAAAATGCCTATGCATCTCTGAAGGCACTGACCAACATGGCAAATCCCTCCATCCGAGCGTCAGTCTGAAGCGATATTAGTCCATCCTCACTGTTTTCTTACTGACTCGTAGAAAATGGAGGAGAGACTGAGAGAAATAGAATATATAACATTcaattactcacacacacacacacacacacacacacatccttttgcacacacacacagttctttaCAGATGTGCAGACACACAGGTTTGAGGGACCCAGAGTAACCTCTTTGACCTCATCGAGTCCTTTCTGACCAGTTCCTGCTAAGAGTCTTGAATCTGAAGAGTTTGCTTTGGGTCCTGGGTTAAAGATGCCACCCGTCCTGACTGAAATGCATCCAGAGTTCAGGCTGTTTCCGCTGTCTGAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058067 True 555 lncRNA 0.43 2 9388818 9389648

Neighbor

gene id symbol gene type direction distance location
XLOC_028532 C4H12orf66 coding downstream 38233 9339067 ~ 9350585 (-)
XLOC_028531 avpr1ab coding downstream 174530 9207722 ~ 9214288 (-)
XLOC_028530 hcfc2 coding downstream 192527 9184481 ~ 9196291 (-)
XLOC_028529 chst11 coding downstream 215266 9103182 ~ 9173552 (-)
XLOC_028528 si:dkey-48p11.3 coding downstream 333871 9051588 ~ 9054947 (-)
XLOC_028534 NA coding upstream 124900 9514548 ~ 9521942 (-)
XLOC_028535 si:ch73-139j3.4 coding upstream 135157 9524805 ~ 9533345 (-)
XLOC_028536 tymp coding upstream 153811 9543459 ~ 9549693 (-)
XLOC_028537 shank3b coding upstream 165632 9555280 ~ 9586713 (-)
XLOC_028538 cdnf coding upstream 198320 9587968 ~ 9592402 (-)
XLOC_028527 NA non-coding downstream 337873 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 483365 8904291 ~ 8905453 (-)
XLOC_028521 BX842699.1 non-coding downstream 653227 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 non-coding downstream 750189 8634704 ~ 8638629 (-)
XLOC_028518 BX649324.1 non-coding downstream 800910 8587787 ~ 8587908 (-)
XLOC_028540 BX901962.1 non-coding upstream 259635 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 957090 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1271913 10661561 ~ 10661677 (-)
XLOC_028554 NA non-coding upstream 1359329 10748977 ~ 10752941 (-)

Expression


Co-expression Network