XLOC_028534


Basic Information

Item Value
gene id XLOC_028534
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9514548 ~ 9521942 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058068
tgttcagataagaagggtcggatctttctgatgttatagagtgtgaatctgcacgatcgagcagttctagagatgtggtcagagaagtttagttggtcatcaatcgttactccaaggcttttcaccattttggatgcagtaatggttgccccatccatctggattgaaaagttatggtgtagagtcgagttggcagaaactacaagcatttccgtatGCTTATGTAAAGtgcttatgtaaagcactttgaattaccattgtgtatgaaatgtgctatataaataaacttgccttgctgaaatgtaatggaaagacagttcaccagaagccaTTTGCTGGCTGTACAAATTAAAAgtttgtgtgcatataccccattgtgtatttaaaaaaagaagtttttCTGATATGAATTACGATCATTACATATTTAATAGAAAAAAGTCAATcaaattatgttgtgtttttttctgtatattttgAGCAAAGATCAAAAGGTTAAACAATAAGTTTTAAGTTAAACTCATATTTACCAAGTGTGCCAATAAAAATGTCAGGCAACGCAAGACAAAACTACTTGCAAAGCAAATATATTATCAAAACACTGTTATATGGCaaacatatttatgcatatacaaatatatataaataaagaatacAAATCTAACAGATTTCTATGTAAACCatataattacaaataaacattGTATATACAAAGGCTATAATTACATACATTTGATTATTACTAATCAACAATAAAACATGTAACTGTGTTTAAAACACCATTAGTCATGATTTTGCATCTCATCTGTGATGTTTGACCGATTCAAGAGGTTGTTTTGTAAATCCTTGCACACTCAGACCTGCTTTATGAGTCAAGTCTTGATGTTAGTGACACTGGAGTGTGTgaatgtatctgtgtgtgtgtttcggaAGCTGAGTCGGCGAGTCAAGAGTGGGCTTTGACTGAAGTTTGATGGACGACACTCTCTATGGGCCATAAAGAGCGgcgtgtctgtgtgaatgagaggGCTCTTTGTTGAGGTCGCTTTGCGGTTGATGATAGCCAGGCTGACATTACTGACCTCATGCGGTTATGAGCTGGCAGTCATGCTTTTACGACAACAGTTGACAGCGCACGCATTGATGAAGACAAAGAGAAAGTTGGGATGGAGAGGAGTTTGAGATTTCCATTGCCGGTACCTGATTCGGATCTGAATAGAGTGATGCACAATGAATCAAATCTGGGAGGGGGTTTCAGGACCGACTGGGATGTGGTGTGACCGTGACACAAACGATCTTTGATAATAGCGTAATAGGACTGATTTAGAATGCATTTCAGaggaattgtttatttaaatatgaaaattgtgTCATTGACTCATCCTTGGGTCATTCCAGATTGATTTTGTTTCGTGAGAAGCTTTGAAGTatgttcatgctgctcttttAATGTGGTTAAACGAGCGAAAATTCTAATAGTTTCTCGATGCATATATGCATATTGTATTTGAGGTCATACATACTGTCAGGAAAACAATATATAACTCAtacttttaaaatacagtaataattaAACTCCTTTAGTGCTTTATATGTAGTCCATATAATAACAAAAGGCAGCTTTGTGCATATTGGAACAAAGATTaccaacaaaaaaatgaacatttactcactgtttactctccctcatgtgcttccaaacctttatctttttctgttgaacacaaaagaagatatttagagtTGTTtttataaacctgtaaccatcgacttccatactttcgtttttttttcctgatatggaagtcaatggttacaggtttctaacatcttccatttaatttcttttgtattcaacaagaaagaaacaagtttaaaacttctgaaagtttttttttcttcgatattttgtagttttgggtgaactgtctctaaGATGACATTTACTATTGTATTAGATACAAGATATCAAACCAAGTGACATCAACAAGCCTAATTTTTAAATTAACGTCACTTAATATTTTAAGTATCAATATGTTCGTCATACAGTAGTTTAAAAACTACATCTCTAAACCCAGTTTTCCTAATTATGTTCACTGTTTTACTTAAAAAGTGCGTTTGGGCTGTATTTCTTTAAGagaggggtgtcaaactcagttcctggagggtcgtagctctgcatagtttagttccaactctaattaaacataTCTGATCATATTAAATGaatccttcaggtttgtttgaaacctacagacaagtgttttgaagcagggttggaactaaactgtgtagggGTGCGGCTCTTCAGGAACAGAGTTTGACATCTctgctttaaaattttatttgatgcaCTCAAATTCATACcgacagttaaagtcagaattattagccctcctgtttattttttccccaaagttctgtttaacggagagaagattttttttcaacccatttctaaacataatagttttaataactcatttctaataactgatttattttatctttgccttgatgacagtaaataatattttaatagatatttttcaagacacttctatacaacttgacatttatagccataactaggttaactaggcacgttaaagtaattaggcaagtcactgtataacgatggtttgttctgtagactctttgaaaaaaatgtagcttaaaggggctaataattttgtccttaaaatggtgtttaaaaaatttaaaactgcttttattctagccaaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtaataatttccctgctctgttaaacatcatttgggaaatatttaaaaaagaacaaaaacaaaaggatcaaaaggaggctaataattctgacttcaactgtagtgtTGCTAAAATGCTTTTGTTGTACATATAGAGGCAGCATGAACATTCATCCCTTTGTCTTCAATGGAATACAGTCAGTCATGCGATATTATGGTGAGTTAATGGCTGAAGCATTTCCAATTTTGGATGAGCTACCCCTTTAACCCTTTACAGAGTGAAGAACTGTATATGCTGACTTCACTTACATTGATTACAGTATAATTaatttgcttagtccctttatttatcaggggtcgccaccacgggatgaaccgccaacttatccagcatgttttacacagcggatgtccctccaactgcaacccagtactcggaaaaacccacacactctcacatgcacacacatacactaccacCAATTCAGTtgattcaatttacctatagtgcatgtctttggactgtgggggaaaccggaagaaacccacgcgaacacagggagaacatgcaaactctgcacagaaatgccagctggcccagccggggctcgaaccagtgaccttcttgctgtgaggcgaaagtgctcaCCAATAAACGACTGTGTTGGcttaataaagtataataataaaaatgaagtcTCATAAGGTCAAAAGTCTCATAATAACACTTCTATGAGCATCAAAGCGCCCTATAAAGGGTTAAGAACAAAATAGAATTCCATTCTAGAATTCCATTCCAAATCATGTTCCAAAAAATCTGTTCTAATCTACTCAGTTGGCCTTAATCTCATGACATAAATCTCATTTAGTCACAGTGAGCAGAAAAACAGACACCGGAAGAGAATGAGCCAGAGATGCTGTAGCAAGTGAGATTGAATTATGGGACATGACTCATGTTGATGTTACATCTTCATCATACGAGCTCTTTTCTCATGCTCTCTGGGTTTCCCCATATTGTCAGGAAAACAATCAGCTCTTGTTGCGCATCAGAGTGTGAGCGTGTGTACACGGCCAAACAAGTTAACACAACTCAGTTAGACCACTGACCTGGATTACAGACTCTCTCCAGCAGGACAGAGCTGTTTGATTCTGTTTGTCGTGGAAGTCAAAACCTTGTTCACAATGTCAGTCCAAATATGAATGGAATTGAGTATGAACAGCAAAAAAGTTTCAATATTGGCTTTAAAATCCTACTCAAATCACATTTTTAGTCTGAATGCTCTGTTTTTAgattatgtataattttttttgcccaTGAGGCTATGTATAATGTAAAAACATCACTGTTTATATAAAAGTTTGTAGAAACTGACTGAAAATTACAATATAATGCTATTCGGTCTGGTTTACGTATTTCTTTGTAGGGCTAGTTCACACAATAAATGAAAAGTCTATGTTTAACTACCCTCATGTCGTTCTAATCCCCTGAGACTCGTTTTTCTTCAGAACACTTCTTAAgtcattttagatgaaatccgagagctctctcatcctccatagacagcaatggtccagaGATGTTTTGACCTTTTAGGTCTTGAAGTATACTGTGATCTGGCATTTATCTTGACAGAGTCAAGAGTCATTTCACGCACAAGTCCATTCAAAATCATTTTTGTTAGACTTAAATATCTTGTCACGATTGAGAATTGTGGATTTCTTTGGTAATTAATGCTGTTCATGATGAAGTCGGAAGTTTGGAGTCACATGCTAAACTTTGCAGACTTGGAATAGTGGACTTGACTTTAAAGTcctgaaaaggaaccaaaaacatgttTAATGTAACTTCAGAGGTACAACTGTAATCATAAGAAGTCCCAAGAACAATTGTGTATGGCAGAATCTACACAGATGACTTTGTTTGCCAATGTGTTCTGCATTAGATAAGGAAAACTTGGCTGTTCATGGAAATGTTTGAATGGAAATAAGTTGCCAGATGACGCATAATTGGTGCGAGGGATCGTATTCAATATTTGGATGCCACAAACCACTTAATTCAATGACTACTTGTCACTTTTACTAAAATGCAGGTAAGGCGGCCAAATCGGCTCTAGGCTCTAGTGGTGCCAAAGCTCTTCGTGGGTCACTCCTGAACCCCCACCCCGACCAGAAACCACAAAGTTTGGGGCCCACAGGTCCTTTGCAAGTGTTTAATTAGCTGGCAGGGGGAGGGGCGGATTTAATAATTTTCTCTGAATATTTCTTTCTGATTTTTTTCAAGTGCTTGCCCTGCACCGATTGGTATGAAAGTTGAATAGGAGTTGCAGGGGGCCTTGACGAAACTGTAGTCAAAGCTCCCACCGTTTTGCACCAAAATAAAGGTCCCTTTGACTGCTCAAACAAGAAGGTCCAACGTGTAACTTATTTGAGTGGGCCCAAATAGGCTGCTCGTGGACAGTGCTTTTTTAGGCCACAGAAGTCTTTTGGTGAGCTCTGACATGGAAAAAAACTGCTGAGTGGGGCCTCCTGACCCCTCTGCTCCTCCTAATGAACTCCAAAATCGTTTCTGCTGTGAATGGTGACCTTTTACAGGGGTGTCCACAGACAGTCTACCTAGCCCTGATCAAATAAGTTACaggtgggatgttttttttatccGTCTGTGAGCTGGAAAACCTCAAAAAGTGGCAAAAAACCTATTGAGGTGGATATGCAAGCCCCCCTGGGCCACGTCAAGTTGTCAAAATGTCAAAATCAGAAGCTGAGATCTGGACATCCCACCTACAATCTATTCCATTCATAAAAACGGGTGGTTGCTGGACAGTCAAGAAACGGCCATGATTGTACATGATACAAACTTAACACTCTCACAAGAAAGAAAACATTAGCAAAGtcacttttagttttttttttttttgatgaggaAGCTCTCGGATTTCTTCTAATTTTTTCATTTCACACACAAATCAGATCCCAACAGTGTGGACAGTCAACCATTTAGATCATAgctctcaaactggattcctggagagccgcatcTCTGCTTAAtgttgctccaactctaatcaaacacagctgatcaagaCTACTAGAGGATATTAAGCAGgcgtgagttggaggtggttgaagctaaactatgcagagctgcgatTCTCCAGGAATTTAGTATTAGACTACTTTTGATCAAATCCCAATCAGATTTGGACTGACAAGTGTGAACGCAAGAGATCTCAGGACCTCACGTTTCCACACACTCACAACAGATTCCCCCTCCATCATCAGAATATTCAAATAAAACACTAGCAAAACACCCAAAATCTTGGCACGCTTGATCACGCTCTAAATCAAACGTGTTTCCAGACAAGCCCGTGCTCTGTTCCAAAGATGTTTTCTGGTGCAACATAAACCGCCGTCCTCATGCAATGACGAGCTCTGGCACAAAAAAGCCATTTATCCTCTCGCGCAGAGGCTTGCAGGACCAGTGGCTTTTTCCTCAAAGCCAGCAAAGCTGCCGCGGGCGCTGCAAGAAGCTCATCAAAGAGCTGCACTTCCTGCCGGATGAAATCATAAAGGTTTTCCCGTGCTGTTTTTCCGGATGGCATCCCGGAATAACAGACCCTCATTGATTGGTTAAGCTCGTCGCGTGTTACGATTGGTCTCTTCGGCCCAAAGTTTAATGGTGAGCAGGTATGGCTTAAAAGCATCCCGTTCTGGATATTCCCTTCATAACTCCGGAGCATACTGGCGTTTCCGTCGACtttccttttgcttttttt

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058068 True 6550 lncRNA 0.38 2 9514548 9521942

Neighbor

gene id symbol gene type direction distance location
XLOC_028533 NA coding downstream 124900 9388818 ~ 9389648 (-)
XLOC_028532 C4H12orf66 coding downstream 163963 9339067 ~ 9350585 (-)
XLOC_028531 avpr1ab coding downstream 300260 9207722 ~ 9214288 (-)
XLOC_028530 hcfc2 coding downstream 318257 9184481 ~ 9196291 (-)
XLOC_028529 chst11 coding downstream 340996 9103182 ~ 9173552 (-)
XLOC_028535 si:ch73-139j3.4 coding upstream 2863 9524805 ~ 9533345 (-)
XLOC_028536 tymp coding upstream 21517 9543459 ~ 9549693 (-)
XLOC_028537 shank3b coding upstream 33338 9555280 ~ 9586713 (-)
XLOC_028538 cdnf coding upstream 66026 9587968 ~ 9592402 (-)
XLOC_028539 dclre1c coding upstream 81364 9603306 ~ 9637398 (-)
XLOC_028527 NA non-coding downstream 463603 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 609095 8904291 ~ 8905453 (-)
XLOC_028521 BX842699.1 non-coding downstream 778957 8709082 ~ 8735591 (-)
XLOC_028520 BX649324.2 non-coding downstream 875919 8634704 ~ 8638629 (-)
XLOC_028540 BX901962.1 non-coding upstream 127341 9649283 ~ 9651968 (-)
XLOC_028551 NA non-coding upstream 824796 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1139619 10661561 ~ 10661677 (-)
XLOC_028554 NA non-coding upstream 1227035 10748977 ~ 10752941 (-)
XLOC_028555 NA non-coding upstream 1244072 10766014 ~ 10835620 (-)

Expression


Co-expression Network