G936449


Basic Information

Item Value
gene id G936449
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4319579 ~ 4324232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1067958
gtagactatattacatggatttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtaggtagactatattacatgtatttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtagactatattacatggatttattgtgatggtgtagactattacatggatttattgtgatggtgtaggtaggctatattacatggatttattgtgatggtgtagggagactatattacatggatttattgtgatggtgtagactacattacatggatttattgtgatgttgTAGACTATTACATTGATT
>TU1067957
ctatattacattgatttattgtgatggtgtagggagactatattacatggatttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtaggtaggctatattacatggatttattgtgatggtgtagggagactatattacatggatttattgtgatggtgtagactacattacatggatttattgtgatgttgTAGACTATTACATTGATT
>TU1067959
tattacatggatttattgtgatggtgtaggtaggctatattacatggatttattgtgatggtgtagactatattacatggatttattgtgatggtgtaggtaggctatattacatggatttattgtgatggtgtagggagactatattacatggatttattgtgatggtgtagactacattacatggatttattgtgatgttgTAGACTATTACATTGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1067958 False 334 lncRNA 0.32 4 4319579 4324232
TU1067957 False 228 lncRNA 0.32 4 4321549 4324232
TU1067959 True 221 lncRNA 0.32 3 4323221 4324232

Neighbor

gene id symbol gene type direction distance location
LOC118937460 NA coding upstream 202176 4109412 ~ 4117403 (+)
LOC118937480 NA coding upstream 295887 4023597 ~ 4023692 (+)
LOC118937479 NA coding upstream 298247 4021240 ~ 4021332 (+)
LOC118937478 NA coding upstream 299004 4020480 ~ 4020575 (+)
LOC118937477 NA coding upstream 299671 4019814 ~ 4019908 (+)
LOC110536527 trpa1 coding downstream 167536 4491768 ~ 4568591 (+)
LOC118937435 msc coding downstream 259384 4583616 ~ 4586582 (+)
eya1 LOC106590661 coding downstream 495513 4819745 ~ 4956185 (+)
LOC118937293 NA coding downstream 634812 4959044 ~ 4963664 (+)
LOC100136147 tram1 coding downstream 844655 5168887 ~ 5184807 (+)
G936444 NA non-coding upstream 14777 4304588 ~ 4304802 (+)
G936440 NA non-coding upstream 39114 4280246 ~ 4280465 (+)
G936439 NA non-coding upstream 44301 4275079 ~ 4275278 (+)
G936438 NA non-coding upstream 45756 4273587 ~ 4273823 (+)
G936437 NA non-coding upstream 47777 4271569 ~ 4271802 (+)
G936452 NA non-coding downstream 7233 4331465 ~ 4331788 (+)
G936459 NA non-coding downstream 18671 4342903 ~ 4344147 (+)
G936470 NA non-coding downstream 42720 4366952 ~ 4401418 (+)
G936477 NA non-coding downstream 60158 4384390 ~ 4385052 (+)
G936613 NA non-coding downstream 78414 4402646 ~ 4404224 (+)
G935977 NA other upstream 337381 3981851 ~ 3982198 (+)
G935976 NA other upstream 338428 3980771 ~ 3981151 (+)
G935846 NA other upstream 769092 3550039 ~ 3550487 (+)
G934640 NA other upstream 2410499 1908660 ~ 1909080 (+)
G934579 NA other upstream 2492213 1826627 ~ 1827366 (+)
G937051 NA other downstream 695673 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 819085 5143317 ~ 5144565 (+)
G937237 NA other downstream 1180472 5504704 ~ 5505329 (+)
G937889 NA other downstream 1797352 6121584 ~ 6122269 (+)
G938723 NA other downstream 2694919 7019151 ~ 7021424 (+)

Expression


Co-expression Network