XLOC_028540 (BX901962.1)


Basic Information

Item Value
gene id XLOC_028540
gene name BX901962.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9649283 ~ 9651968 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055359
AGCTTCAGGTGTTTGTTTGACAACAACAAGCGTGTGTTGACAGCCGGCAAAACAAAACACGTGCAGTTTGTTTTAAACACATGATTTACAGATGACAGCTCAGCGACAGACTCTTAATGTGTTTAAACAGCACATATTAAAGCTCAGCAGCAAATTAAAGCTGCAGACTCTGTGATAAAGTGCAGGAATCAAGTGAAGAGACTCACCTGATGAAGGATGTGTTTGGAGTGAACAGAAGCAGAGCTCTGGGACATTTGGACAGCCGTGGACTGTAATGGTGGACTTCTGCTGATGGACAGGTTGGAGGTTAACTCTGGAAAGTGGATCTTCAGGATCAGGATTAAACAACAGCTTTAGAAAAAAAGTCTGCATTTGTTCTTCAGTTTTCATGTGTTGATGCAGAACCACTCTTTGTCCACAAGATGGAGCTAAAACACTGCTCTGATCTCATGCGCCTCTAAATAAATCCGCCATTAAACACCAATAAATATTTAGTAGTcaacatattaaattaattgataggaatttacattttaaaccagATTTTATTTGTTCAGACATGCTGTATGCACAGTCAAAATCGTCTATAAATGCTGCTTGCATTTGCTAACAgtgatataaaaactaaataaatatttacaataagtcaacatcacttaaaaaaagaagcaaaataaataaagttgacaCAGAGACAGAC

Function

GO:

id name namespace
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:1901701 cellular response to oxygen-containing compound biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0046460 neutral lipid biosynthetic process biological_process
GO:0046463 acylglycerol biosynthetic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055359 True 700 lncRNA 0.37 3 9649283 9651968

Neighbor

gene id symbol gene type direction distance location
XLOC_028539 dclre1c coding downstream 11885 9603306 ~ 9637398 (-)
XLOC_028538 cdnf coding downstream 56881 9587968 ~ 9592402 (-)
XLOC_028537 shank3b coding downstream 62570 9555280 ~ 9586713 (-)
XLOC_028536 tymp coding downstream 99590 9543459 ~ 9549693 (-)
XLOC_028535 si:ch73-139j3.4 coding downstream 115938 9524805 ~ 9533345 (-)
XLOC_028541 dmtf1 coding upstream 248 9652216 ~ 9667410 (-)
XLOC_028542 tspan9b coding upstream 44997 9696965 ~ 9722568 (-)
XLOC_028543 mical3b coding upstream 72224 9724192 ~ 9764769 (-)
XLOC_028544 svopl coding upstream 117082 9769050 ~ 9781132 (-)
XLOC_028545 si:dkeyp-27e10.3 coding upstream 132333 9784301 ~ 9810999 (-)
XLOC_028534 NA non-coding downstream 127341 9514548 ~ 9521942 (-)
XLOC_028533 NA non-coding downstream 259635 9388818 ~ 9389648 (-)
XLOC_028527 NA non-coding downstream 598338 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 743830 8904291 ~ 8905453 (-)
XLOC_028521 BX842699.1 non-coding downstream 913692 8709082 ~ 8735591 (-)
XLOC_028551 NA non-coding upstream 694770 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 1009593 10661561 ~ 10661677 (-)
XLOC_028554 NA non-coding upstream 1097009 10748977 ~ 10752941 (-)
XLOC_028555 NA non-coding upstream 1114046 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding upstream 1119906 10771874 ~ 10785654 (-)

Expression


Co-expression Network