G937082


Basic Information

Item Value
gene id G937082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5138000 ~ 5187878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1068762
tttgACTAGGGCTCaggtgtaaagtagtgcactatataaagacaatagggtgccatttggggatgTAGACATTGTATTTATGTCTCCTTTGAGCATGTCCACGAGAATATAATTTTGTTGTTGAAGACATTATGGataaagaaatgttttgttgttctGTTTTTATGCCCGTTTTTATTTTAACTGAACGTGCCAAATGCTAAGTTCTCCTCATGACACAGGGCATAAAACCCACCCTGGCTCTTTACTGTTGTTCAACATGCCCACTCGTTGCCATTAAACATTATTTACACAAAA
>TU1068764
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcatttgggATACAACTGTGGAGTTATGTTGTTTTTAGAGATAATCTAGAGTGCCTACCAAGGCACTGAAAGGATATGTTCCCTATATCTCTCTTTTCAGATCTACATGAAGGGCTGTGAgctaaatggcaccatatttccctatatagtgcactactttttgactaAGGCTCaggtgtaaagtagtgcactatataaagacaatagggtgccatttggggatgTAGACATTGTATTTATGTCTCCTTTGAGCATGTCCACGAGAATATAATTTTGTTGTTGAAGACATTATGGataaagaaatgttttgttgttctGTTTTTATGCCCGTTTTTATTTTAACTGAACGTGCCAAATGCTAAGTTCTCCTCATGACACAGGGCATAAAACCCACCCTGGCTCTTTACTGTTGTTCAACATGCCCACTCGTTGCCATTAAACATTATTTACACAAAA
>TU1068765
ctaagcACTTCTTGGTATAAGCAGTATGGTGAAACTTCAACCTTGATCTTATCATCTGAAGGACTACAGCTCCTCCCAGTAGGACTACAAACTCCACAATGCATCTCGGCTTTATCTGCTCCTTGCCAATCTCAAGTGatcccgtttttttttttttttttcccattATCGTCACGTGCCATTACTACAGaaaaataaaatgataataaaaaaaaatatatatatatataacttattTAAGTGCCTATTGATACAGATTGTTGTGTACAGTTTTAAAATTTCAGGAATGATGGAGAAGAAAAAGAAATCAGTGTTTTCAGTAATCTGTTTCTAAAGTCAAACATTTCATATgccatttttttccccccaacaTTTTTATTTATCAGACTGTATGCCATTCTGTTTCTTTAACAAAAAGGGCTTCTTGAATTCATTCCCATCTGTTTGGAATCACTAGCAGAGAAACTCCATGCACCTGCCTTACTTTCCCTCAGTCTGTATCAGAGGTTTTAGTTACATcgttcttctttgtcttcttttCCAGTAGTTGAAACGGCTTCATTCCCCCTTTTGTTTCCTTTCCTTCGTCAACACAAGGGTTACTAGACTGGATAGGATTCATTGCTTTCCCACCACAGTGCTTTAACCTACCAGTTTGTGTGTCCCAAATTACCATTcttattcccaatatagtgctccacttttgaccagaggtgTATTGGTagtggtcgaaagtagtgcactacagaaggaatagggttccatttgagtcccagacattctctcaggacactGGCAGTGAGAACGCAGGACAGGGAACAAGGATAGGAAgccattttagagaattttgagttttaattTGCTTTTCAAGCCTTTTGCGTTGTTggtgctgtaaaaaaaaaaaaaaaaaaaaaaaattggggccCTGTTTTACGTCTCTGGTTAATGCATCCTTCCTGTGGTCTTTTCTTTCCCTGAAACCATCGCTGATCTAACGTGGTTGGATAGGGCTGTTTACCCCAATCCAGCCAATGGTAGGATCAGTGGTCACTCTATGTGGAGGGAGGAAGCTATTATTGaagtgcatcctaaatggcaccctattgcatacatacatatacacacatatatatatatattagtgcactacttatgacctcAGCCCATTGTCtctgtacactatatagggaatagggtgctatgacCACTGcccatatgtatgtgtatgtgtgtgtgtcatttgggATACAACTGTGGAGTTATGTTGTTTTTAGAGATAATCTAGAGTGCCTACCAAGGCACTGAAAGGATATGTTCCCTATATCTCTCTTTTCAGATCTACATGAAGGGCTGTGAgctaaatggcaccatatttccctatatagtgcactactttttgactaAGGCTCaggtgtaaagtagtgcactatataaagacaatagggtgccatttggggatgTAGACATTGTATTTATGTCTCCTTTGAGCATGTCCACGAGAATATAATTTTGTTGTTGAAGACATTATGGataaagaaatgttttgttgttctGTTTTTATGCCCGTTTTTATTTTAACTGAACGTGCCAAATGCTAAGTTCTCCTCATGACACAGGGCATAAAACCCACCCTGGCTCTTTACTGTTGTTCAACATGCCCACTCGTTGCCATTAAACATTATTTACACAAAA
>TU1068770
caacaTTTTTATTTATCAGACTGTATGCCATTCTGTTTCTTTAACAAAAAGGGCTTCTTGAATTCATTCCCATCTGTTTGGAATCACTAGCAGAGAAACTCCATGCACCTGCCTTACTTTCCCTCAGTCTGTATCAGAGGTTTTAGTTACATcgttcttctttgtcttcttttCCAGTAGTTGAAACGGCTTCATTCCCCCTTTTGTTTCCTTTCCTTCGTCAACACAAGGGTTACTAGACTGGATAGGATTCATTGCTTTCCCACCACAGTGCTTTAACCTACCAGTTTGTGTGTCCCAAATTACCATTcttattcccaatatagtgctccacttttgaccagaggtgTATTGGTagtggtcgaaagtagtgcactacagaaggaatagggttccatttgagtcccagacattctctcaggacactGGCAGTGAGAACGCAGGACAGGGAACAAGGATAGGAAgccattttagagaattttgagttttaattTGCTTTTCAAGCCTTTTGCGTTGTTggtgctgtaaaaaaaaaaaaaaaaaaaaaaaattggggccCTGTTTTACGTCTCTGGTTAATGCATCCTTCCTGTGGTCTTTTCTTTCCCTGAAACCATCGCTGATCTAACGTGGTTGGATAGGGCTGTTTACCCCAATCCAGCCAATGGTAGGATCAGTGGTCACTCTATGTGGAGGGAGGAAGCTATTATTGaagtgcatcctaaatggcaccctattgcatacatacatatacacacatatatatatatattagtgcactacttatgacctcAGCCCATTGTCtctgtacactatatagggaatagggtgctatgacCACTGcccatatgtatgtgtatgtgtgtgtgtcatttgggATACAACTGTGGAGTTATGTTGTTTTTAGAGATAATCTAGAGTGCCTACCAAGGCACTGAAAGGATATGTTCCCTATATCTCTCTTTTCAGATCTACATGAAGGGCTGTGAgctaaatggcaccatatttccctatatagtgcactactttttgactaAGGCTCaggtgtaaagtagtgcactatataaagacaatagggtgccatttggggatgTAGACATTGTATTTATGTCTCCTTTGAGCATGTCCACGAGAATATAATTTTGTTGTTGAAGACATTATGGataaagaaatgttttgttgttctGTTTTTATGCCCGTTTTTATTTTAACTGAACGTGCCAAATGCTAAGTTCTCCTCATGACACAGGGCATAAAACCCACCCTGGCTCTTTACTGTTGTTCAACATGCCCACTCGTTGCCATTAAACATTATTTACACAAAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1068762 False 297 lncRNA 0.37 2 5138000 5187878
TU1068764 False 499 lncRNA 0.39 2 5139149 5187878
TU1068765 False 1692 lncRNA 0.38 2 5186165 5187878
TU1068770 True 1325 lncRNA 0.40 2 5186532 5187878

Neighbor

gene id symbol gene type direction distance location
LOC118937293 NA coding upstream 174336 4959044 ~ 4963664 (+)
eya1 LOC106590661 coding upstream 181815 4819745 ~ 4956185 (+)
LOC118937435 msc coding upstream 551418 4583616 ~ 4586582 (+)
LOC110536527 trpa1 coding upstream 569409 4491768 ~ 4568591 (+)
LOC118937460 NA coding upstream 1020597 4109412 ~ 4117403 (+)
LOC110536532 LOC106579720 coding downstream 5303 5193181 ~ 5518848 (+)
LOC110535182 prdm14 coding downstream 244448 5432326 ~ 5439359 (+)
LOC110535189 LOC106579706 coding downstream 840782 6028660 ~ 6038322 (+)
LOC110536599 LOC106579705 coding downstream 853964 6041842 ~ 6098398 (+)
LOC110535186 LOC106579708 coding downstream 939497 6127375 ~ 6139717 (+)
G937071 NA non-coding upstream 52008 5081064 ~ 5085992 (+)
G937038 NA non-coding upstream 133334 5003968 ~ 5004666 (+)
G936917 NA non-coding upstream 296040 4838840 ~ 4841960 (+)
G936905 NA non-coding upstream 327912 4809778 ~ 4810088 (+)
G936876 NA non-coding upstream 345388 4790706 ~ 4792612 (+)
G937182 NA non-coding downstream 110361 5298239 ~ 5306964 (+)
G937190 NA non-coding downstream 119201 5307079 ~ 5308063 (+)
G937197 NA non-coding downstream 162585 5350463 ~ 5350802 (+)
G937236 NA non-coding downstream 316639 5504517 ~ 5506154 (+)
G937051 NA other upstream 109855 5019905 ~ 5028145 (+)
G935977 NA other upstream 1155802 3981851 ~ 3982198 (+)
G935976 NA other upstream 1156849 3980771 ~ 3981151 (+)
G935846 NA other upstream 1587513 3550039 ~ 3550487 (+)
G934640 NA other upstream 3228920 1908660 ~ 1909080 (+)
G937237 NA other downstream 316826 5504704 ~ 5505329 (+)
G937889 NA other downstream 933706 6121584 ~ 6122269 (+)
G938723 NA other downstream 1831273 7019151 ~ 7021424 (+)
G939408 NA other downstream 2386474 7574352 ~ 7574909 (+)
G939544 NA other downstream 2632642 7820520 ~ 7823317 (+)

Expression


Co-expression Network