G937288


Basic Information

Item Value
gene id G937288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5139154 ~ 5273465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1069005
GTGTAAATAATGTTTAATGGCAACGAGTGGGCATGTTGAACAACAGTAAAGAGCCAGGGTGGGTTTTATGCCCTGTGTCATGAGGAGAACTTAGCATTTGGCACGTTCAGTTAAAATAAAAACGGGCATAAAAACagaacaacaaaacatttctttatCCATAATGTCTTCAACAACAAAATTATATTCTCGTGGACATGCTCAAAGGAGACATAAATACAATGTCTAcatccccaaatggcaccctattgtctttatatagtgcactactttacacctGAGCCTtagtcaaaaagtagtgcactatatagggaaatatggtgccatttagcTCACAGCCCTTCATGTAGATCTGAAAAGAGAGATATAGGGAACATATCCTTTCAGTGCCTTGGTAGGCACTCTAGATTATCTCTAAAAACAACATAACTCCACAGTTGTATcccaaatgacagacacacacacacacacacacacacacacacacaca
>TU1069008
GTGTAAATAATGTTTAATGGCAACGAGTGGGCATGTTGAACAACAGTAAAGAGCCAGGGTGGGTTTTATGCCCTGTGTCATGAGGAGAACTTAGCATTTGGCACGTTCAGTTAAAATAAAAACGGGCATAAAAACagaacaacaaaacatttctttatCCATAATGTCTTCAACAACAAAATTATATTCTCGTGGACATGCTCAAAGGAGACATAAATACAATGTCTAcatccccaaatggcaccctattgtctttatatagtgcactactttacacctGAGCCTtagtcaaaaagtagtgcactatatagggaaatatggtgccatttagcTCACAGCCCTTCATGTAGATCTGAAAAGAGAGATATAGGGAACATATCCTTTCAGTGCCTTGGTAGGCACTCTAGATTATCTCTAAAAACAACATAACTCCACAGTTGTATcccaaatgacacacacacatacacatacatatgggCAGTGgtcatagcaccctattccctatatagtgtacagaGACAATGGGCTgaggtcataagtagtgcactaatatatatatatatgtgtgtatatgtatgtatgcaatagggtgccatttaggatgcacttCAATAATAGCTTCCTCCCTCCACATAGAGTGACCACTGATCCTACCATTGGCTGGATTGGGGTAAACAGCCCTATCCAACCACGTTAGATCAGCGATGGTTTCAGGGAAAGAAAAGACCACAGGAAGGATGCATTAACCAGAGACGTAAAACAGggccccaattttttttttttttttttttttttacagcaccAACAACGCAAAAGGCTTGAAAAGCAaattaaaactcaaaattctctaaaatggcTTCCTATCCTTGTTCCCTGTCCTGCGTTCTCACTGCCagtgtcctgagagaatgtctgggactcaaatggaaccctattccttctgtagtgcactactttcgaccactACCAATAcacctctggtcaaaagtggagcactatattgggaataagAATGGTAATTTGGGACACACAAACTGGTAGGTTAAAGCACTGTGTCTGTCTCTTCTCGTTGCTGAAGTAGACCAGGCGGGACACGTGGAAGAGAAGCTCTACGAAGCAGTGCAACACCAGCAGGACCAGAGCTAGACGATTCAGA
>TU1069007
acacacccacacacacacacacacacacacacacacacacacacacacgcacacacacatacacatacatatgggCAGTGgtcatagcaccctattccctatatagtgtacagaGACAATGGGCTgaggtcataagtagtgcactaatatatatatatatgtgtgtatatgtatgtatgcaatagggtgccatttaggatgcacttCAATAATAGCTTCCTCCCTCCACATAGAGTGACCACTGATCCTACCATTGGCTGGATTGGGGTAAACAGCCCTATCCAACCACGTTAGATCAGCGATGGTTTCAGGGAAAGAAAAGACCACAGGAAGGATGCATTAACCAGAGACGTAAAACAGggccccaattttttttttttttttttttttttacagcaccAACAACGCAAAAGGCTTGAAAAGCAaattaaaactcaaaattctctaaaatggcTTCCTATCCTTGTTCCCTGTCCTGCGTTCTCACTGCCagtgtcctgagagaatgtctgggactcaaatggaaccctattccttctgtagtgcactactttcgaccactACCAATAcacctctggtcaaaagtggagcactatattgggaataagAATGGTAATTTGGGACACACAAACTGGTAGGTTAAAGCACTGTGGTGGGAAAGCAATGAATCCTATCCAGTCTAGTAACCCTTGTGTTGACGAAGGAAAGGAAACAAAAGGGGGAATGAAGCCGTTTCAACTACTGGaaaagaagacaaagaagaacgATGTAACTAAAACCTCTGATACAGACTGAGGGAAAGTAAGGCAGGTGCATGGAGTTTCTCTGCTAGTGATTCCAAACAGATGGGAATGAATTCAAGAAGCCCTTTTTGTTAAAGAAACAGAATGGCATACAGTCTGATAAATAAAAAtgttggggggaaaaaaatggcATATGAAATGTTTGACTTTAGAAACAGATTACTGAAAACACTGATTTCTTTTTCTTCTCCATCATTCCTGAAATTTTAAAACTGTACACAACAATCTGTATCAATAGGCACTTAaataagttatatatatatatatttttttttattatcattttatttttCTGTAGTAATGGCACGTGACGATaatgggaaaaaaaaaaaaaaaaacgggatCACTTGAGATTGGCAAGGAGCAGATAAAGCCGAGATGCATTGTGGAGTTTGTAGTCCTACTGGGAGGAGCTGTAGTCCTTCAGATGATAAGATCAAGGTTGAAGTTTCACCATACTGCTTATACCAAGAAGTgcttagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1069005 False 490 lncRNA 0.39 2 5139154 5187874
TU1069008 False 1156 lncRNA 0.41 3 5181638 5187874
TU1069007 True 1286 lncRNA 0.39 2 5186164 5273465
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Neighbor

gene id symbol gene type direction distance location
LOC110536526 kcnb2 coding downstream 762158 4361734 ~ 4376996 (-)
LOC110535180 LOC106909841 coding downstream 1051850 4078811 ~ 4087304 (-)
terf1 terf1 coding downstream 1092652 4034747 ~ 4046502 (-)
LOC110536524 rdh10 coding downstream 1123459 3994738 ~ 4015695 (-)
gdap1 gdap1 coding downstream 1616951 3503419 ~ 3522203 (-)
LOC118937461 NA coding upstream 238326 5511791 ~ 5514088 (-)
LOC110536534 sulf1 coding upstream 272943 5546408 ~ 5626954 (-)
LOC110536541 LOC106590236 coding upstream 472029 5745494 ~ 5912106 (-)
LOC110535190 lsm5 coding upstream 765129 6038594 ~ 6041773 (-)
LOC110535187 LOC106579707 coding upstream 840035 6113500 ~ 6121564 (-)
G937257 NA non-coding downstream 86753 5047546 ~ 5052401 (-)
G937048 NA non-coding downstream 127446 5011504 ~ 5011708 (-)
G937042 NA non-coding downstream 132575 5004966 ~ 5006579 (-)
G937010 NA non-coding downstream 141266 4931814 ~ 4997888 (-)
G936907 NA non-coding downstream 328124 4810728 ~ 4811030 (-)
G937373 NA non-coding upstream 22796 5296261 ~ 5298557 (-)
G937405 NA non-coding upstream 151116 5424581 ~ 5425202 (-)
G937425 NA non-coding upstream 225431 5498896 ~ 5503395 (-)
G937522 NA non-coding upstream 318610 5592075 ~ 5593565 (-)
G937256 NA other downstream 96455 5041827 ~ 5042699 (-)
G936486 NA other downstream 1070405 4065516 ~ 4068749 (-)
G936199 stau2 other downstream 1357487 3687773 ~ 3781667 (-)
G936144 NA other downstream 1595835 3541428 ~ 3543319 (-)
G938130 NA other upstream 825925 6099390 ~ 6100232 (-)
G938277 NA other upstream 1192448 6465913 ~ 6466685 (-)
G938331 NA other upstream 1314978 6588443 ~ 6588817 (-)
G938351 NA other upstream 1331720 6605185 ~ 6607755 (-)

Expression

G937288 Expression in all Baseline Samples

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G937288 Expression in each Bioproject

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G937288 Expression in each Sample
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Co-expression Network