XLOC_028545 (si:dkeyp-27e10.3)


Basic Information

Item Value
gene id XLOC_028545
gene name si:dkeyp-27e10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9784301 ~ 9810999 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055374
TATCGGGTGTGTAAAAGGGGCGCGCGCTCGCGAGCCGCATCCGCGCGAGGTGTGCATCTCAACATGACAGTAACATCCAGACAAGGAAGGATACCGAGCAGGAAGACCTGTGTCTATCCGGGGGACATTTTATCAGGGTCGGATGGCCTGTCCTGAATAAGAAACAAGTGAAAATGGAGAGTTCAAGGATGGTCCCGCGGCATCTGCTCGGATGTTGTGTGTTTCTGCTCGCCGCTGTGATGCTGGTGGGCTTCACGGTGACACTCAGCACACACAATGCAGCGGAGCTACCTTCCAACGTGTCCAGAAGGAGCATCAATCAACTTCCGGCAAGAACACGCTCACCTCCTGCcttatcttcatcatcctcatctgctCATCGCTCTGAAAGGACCAGGCGTCCAGCACACACGCCTCCAGGTACCAAACACCCCTCACCATCCCCAGGTCACCATGACAGTGCCTCCAGCATAGATCCCACCCCGTCCCTTGGATCTGAAGGCTCGGGTAACCTAGGCGATGGGGCCCAAGGCATCCACTTGCTGTTACGTCCACCAGATCTACTCACGCCCAGCCAGATGCCACCTCTGCGGGACGACAGACTCCCTACCCCAGCCCCACCCACCCTAGTGCCACCCGAAGACTTATATCCAATCCACTCGGCGGAGATGGACTGGGGTTCTGGAGACTACCTGGAAACTCTTACATTCATGGGATCTGAAGGAGAGGAGTTTTCACTGGTCACCACATTACCGACGCATGGATACGATCCATATGATTTTGACGAAGATGCCACGGTTAGCTACAACACAGCTTTCCCTTCCCGTCCCATTCTTCCTCTTTCATCCAGACACCTCCAGCCCAGCGCTACCGTAAAATATGGGACTCATTTAAGGACCGCCCATCCTACTGATCCCCGCCTCCCATTGGCTCCTGATTCTGATAGAGACGATGATCTGGATTTCGATTGGGCGGAGTTGTTTCCTATTGAGCCAACCGAAATGCTGCTTCCCGACATGAACAGTTTGGAATACTACAACACGTTACAAGCCAAAGAGAACGCTAGTATTGCGAGGAATAAAACGCATCCTCATATTACTCCCACGCACACTTTGGGACCCACCGACAGTCCTACTGGAACTTTGGGAAAAGTCCCGGATCAGGTTGATGGGATAACTCATCAACCAATTCCATCTGAGAAACCTACAAAACCTCTTGTCCCATTGAGCACTGAGACCCAGCGACCTCCAAAAGCTCCGGAGAAGGGTGTTCCTTCCATACCTACATCTCATATGGGCAAAACCAAACCATCAGTGCCAACAGCGCCCCCTCCAGCCAGCATCTCTGAGGGTCCAGTAATACAAGCCGTCACGCTGAAGCCCCCTGCTACAAAACCCCGTACGACCACAGTCAAAACCATCTCTagaactacaacaacaacaacaacaaccaccacTACTACAAATCCCACAAGCCTCTCCACTAAAAGTGCACCGCCTACAATTCCCAAAATTCATCAGCCCATCGCACCACGACAGAATGTCTGCAACATCAGCAAATCAGAAATGTACCTTGTCCGAGTGGGTATGCCAAGTGGATCATCAGTGGAGTTTGCTAAAAATCATGTTCTTGAGATTCTTCGACGAGAGTTTAACCGTTCAGTGGAGCTAAAGGTCCACAAATATCCACCCAATTTTATCTTTCGGGCTTTTTCTGGTCCACTGGTCTACACTGCTGTGTCAGTCATCAATGCTCTCCGCCAACCAATGCACAGCACATCGTCTTCTACCATTCTCTCTGTTACAACTATATATGCAGTGCCTGATTACAAGCATCAGGTCCACACAGTGCTGCAGTTTGTGCCAGGTCATGTGGATGTGCGTCTGTGTAGCTTTAGCGAGCGAGTGGAAAAGGGGCTCCTCATGGCATATGCGGAAGTGCGCAAACGCTCACAAGAAAATGGGAATTTCACAGTCCATATTGTGAACATAACTAGTAGCCTTCCCAAGGGTCAGCGTCCGCAGAAGGCTCCAGTGGACATCACGTTTGCTGTGCGTGATTCTCGTGGTTTTCTAACTGGATCGGATGTGAGCGGCCACATGAGGCAGCTTAGTGCTGTGGAGTTCAGCTTCTACCTTGGTTTTCCTACCCTACAGATCGCTGAACCTTTTCATTATCCTGAACTCAATGTGTCCCACTTGTTACGTGCATCCTGGGTGAAAACAGTTTTACTGGGTGTGTTGGATCAGCGTGTGAACGAGCGGACCTTTCAGGCCAAAATGGAGCGACGATTAGCATTGCTGGTTGGAGAAGGACTTGGGATCGGAATTAACAATCGACGATGGAGAAGATCTACTAGTGTTGGCAACAATAGCGTACagATTGTGCGAGCGTCTCGACTGGATGGGCCTGACTATCCGCTGGAGCTGGTGTATTTTGTGGAAGAGGGTTCGGGAGAGAGACTGCCAGCCCAGGCCACAGCGGCAATGCTGAACAGACTGAACCTGCAGAGAGCCGCCATCGTACTGGGATACCGCGTACACGGAGTTCTAGCCACACCGGTGGAAAAACTGGCCCTGCCGCCGTCTGAGACTCAGCCCAGTAACGTGTGGCTGATCGTAGGAGTGGTGGTCCCAGTGCTGGTGGTggtcctcatcatcatcatcctctacTGGAAACTGTGCCGCTCGGAGAAGCTGGAGTTTCAGCCAGACGCCATGAGCACCATCCAGCAGAGACAGAAGTTGCAGCCTCCCAGCGTTAAAGGCTTTGATTTTGCTAAGCTGCATCTGGGGCAGCATAGTAAGGATGACATCATGGTAATTCAGGAACCCGCCCCGTTACCGCCGTCTGTCAAAGAGGCCACACCCTCAGAGGGCGGTGAATTGAACACGCCTAAATCGAAGAGCTCGTCTACGAAAGCATCACGTGCAGCACGAAGGAGAGGCCGGTTGTCTCCATCTGATGGTGATTCTTTAGGAAGTGAAGCATCTAGTGGTAGAGAATCAGCAGAGGAGAGCACCAGACCTGCTGTGACACCCAGTGACAGCAAACCCCAACATCGAAAGAGCAAGCATGGTGCTCAGCCTGGAAGCGGTGTGGATGAGCAGTTGTCCTCATCGTCCATATTCGAGCATGTGGACCGTGTGTCTCGAGGCTCGTCCGATGGAACACGCAGGGTGTCCAATAAGATACAGCTTATCGCCATGCAGCCCATGCCGAGCCCACCCTCACATCCACATAACCAACCCCTGAGTCCCAATCTGACAGACAAGATTACTGACGGAGCAAAGGTCAACAGTGAGATCCAAGTGGCCTTGAGGCATAAATCTGAGATCGAACACCATCGCAATAAGATCCGCCTGCGTGCCAAACGAAAGGGCCACTACGAGTTCCCCTCCATGGAGGACATCATGGCAGCGTTCGGCGACAACTCCGAGCAGCAGCGAGTGTATCAACAAGCTCAGGAGCAGATACACAAGATCTTGCATCCTGACGAGCACACACACTCGTCGTGCGGAGAGCCACGCAAGAGTTCCAGAGGAAGACGCTCACCCAGACACAGGCAGAGGCAGCAGAATTTAAGTGGAAGCGGAAGTCCGAGAGACAAAGATCGCCTCATTTCTGATCGAGACGCCACCTACAGGAAGTACCCTGGGGTCAACAACGTAGCCTATGTGTCTGACGCAGATCAGCTCCCAGATGCTGGAAGTCCTTCTCCTACTGATGAGGTGTTTTTAGACCCTGGATCGCCTCCGTCTGGCCCCGCCCCTTCACCGCCCGCTTACGTCCCCCCTCAGCCAACCATTGAAGAAGCCCGGCAGCAGATGCACTCCTTATTGGACGATGCTTTTGCTCTGGTCTCGCCCTCTTCTCAAGGAAGTCCTGCTCCTCTAACGTTTACTGGCGTTACGGCGGACACTGGTGTTGGAGGAATCAGCCCCGGTCAACCTTCCAGCCCGTCTCCACGCCCTGCACGCCAATGGGGCTCCTCTTCTTACCCAGCAGCTCCTGCACACAGTCCTTTCTCCGCTGTGAAGATGCAGTCAGATCCTGGGTATTCCAGCAGGGGACAATATGGAGACGAGATGCCCTCGTCCTCTCGACCACGACCAGTAGGGGGCAGCACAGGTGCGCAGTTGCATCAGTTGACACAAGTGGGCTTGTCGAGTCGGATTGGATTGTATCCTGGAGTTGGCCGTAGTGTTTCTGGACCCTCAGGATCAAGCTGGGCTCAGTACCGCTCAGATGAGGAGATCTCTCGACCAGGATCCAACCGAGAGGCTATAATGACATTCCCAGAATACTCTTCTTCACCAGTATTCCAGATGCCCAGGACGTCCCTGCAGGATTCTGCACCCCCCCAGTCCCACCTGGAAGCCTCAAACGCGGGTTACATCGCCCCAGAAGAGCACTCTCCACCACCTCACTCCTCCGCCTCTCTCATCAAGGCCATCAGGGAAGAACTGCAGAGACTTTCTCAGAAACAAGTTGCTGTCGTCAGCTACCACAGTTGAGAAAGACCATCCCAACACCCCAGTCCTGGTAAACTTCCTAATGTActactttaaaaagaaaaaaaaaactcacaaaccCAATGGCTGAGAAGCTGCTTTACACAAAACCCGAACCAAAATCTTCAAATTCAAGTACGGCTGGTCTGTTACACATGAAGAAATACTAGCAATCCTCCATACTGGTATTGCCAGGAGATTTCAGTTTCACTGCTGACATGcagaaaataaactttaataatgttaacaaagaaCAAAACTCgccctaaaaaaactaaaaagtccAGACTGTTTAGACAAATAGACAATTGTGCCCCTTATTCAGACTCTCATTTTGCATGCTGAGAGCTGTCAAGACTTAGTGCTGACTGTTGCTAATGTGAAAACCCCTCCCCTTCGGTTCCACGTCTCTCAAAGTGCTTCCTCCAAATGGCTCATTTTCACGTCTGTGGACTTCCTCTGGTGCTAAAACTCATTCCTGGATTCATTTCATGATTCCACAGATCGACCCAGCCCtggctttttttttcctttaatcgCTTTCATCTTCTCTCATTTTTTCAAGATGGCTTATCAAGTGCTCTGTTCCTAAACCTAGTGAGCTGCCCTAAGGTTGccattttaattatgtttccTTTTAagacactatttttattttttagccaaTTTCTATAGCAGCAATCCACGTTTCCTTTAAACCAACATGACAAATACTATAGTAGTTTATAGTGAATAGTCTAGTGTTTGTAAACCACACTATGGTAAAGTACTTGAGTTAATCTGTTAGGGTAATTCTATAATTGCGATGGTAAAACAATAGcttaaacaaatgacccaaattaaagttttttttatatattatactacaatacaccacagtttactgtagtaaaagctaGAGCATACTGCATACTTTCAGTTCACTATTGTTAATACTACAGGAAGCTAGGGAATTGATTAACAAAGGCTTGTAAATGctattatacagtataatacactttattaCAGTGTGGTTTAGTAttcactataaattactatagtatttttttcatgtgggaaAAGACAAGCACAAGTGATGTTGATTATAAAGATATATTTTACCGCATGACATTCATAAAGACTTCAGATGTTTGGTTTTATCCAGGATTTGCAAAATCTGTGACTTGATTTAGAGTACCACACTGTGAGCTTAGTAAGTAAGTAGTGTGTATTTACTGTATTAGCGCGtatatcgtgtatggccatacacccaaatcaCTTTTGTTAGTTCGGATACCTCCTCTACACTgtaatactgggttccacacaatttcttcatgttatcccaacacaaatcgattaagttaattgAATCATTTTTACAATTTGAGTGGATTGAACCTATAACAACTGATTTACCTTAAGAAttgttttcaactcattttaaattagttgtttaaaccagcagcaaaagtcatttttgagagTACAGGCAGTGCAGCAGCTCACTAGGGTTTGGAACGGAGCTATAGTCTGTCACGATATACAGGTTTTGCCTTACAGTTGAGCTCTGGGTTGTTCAGACTCTGCAGGGGAGGGAAGCAGAGAAGTTACTCTGCGTACTCTTGAGTTTTTGAGCGAGCCCACATGCGGAGATGATCGACAGCCCACCAGCACGATACTCATGCCGGAAACATCGTATTATTTTGCCCAGCCCGTCTGCATCTGGAGAAAGGTATTGAAACAAACATTCAagatgccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgttcaTTCCAGCTCTTTTTTCGCCAGTGGGGTTTTGAATGTTGCCTGTCCAATCAGTTTCTGTGTCCTTAAAGTAGAGCTGAGAAAATCTCTCAGATTACAGATATTAATTTTGCACATTATGTCATCTTTGcacattcataataataatggAAGTCAATCAGTTAAAAAAGTTTTATTGCAGAAATGAGAGATGACTATACggtaactatataaatatatataaaaaaagaaagatataagGGAGTTCATAttctatacaaatatatatatatatatattctatacaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgcatattgATGCATCAACCCATTGAGCACAATACGATTATATGTTAGATTATATGTTAAGCATATtagattgtatttatttttattgttatgaaAGTATGTATTAAAGACGTGGGGAAAGTGTTGCTAtgggacattaaaaaaaaacgacCAAATCACTGTTGAGGCATATAGTTACTTCAGCTTCGTACTTCAGTAGGCATTTTCAATGTATTTTCATGTATGTGGTCATGTGGATTTGGATTTGCACAGAGCTATTGTAACGATTCCTGTAAGGAAATGTGTTGAGGATAAAGGCCTTGTTCagtatatatttatctttttcttttaatatttttttatatttaatatcttttttttctttttctttttttgaatacAATTGTTTTCCTCTTATCCCCctattttttattctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatccatctatctatctatctatctatcctcccTATTTTTTTTGGTAATGCAGGGTTCACACACTCATGGAAATATCTTGGAAATATCatgaaaaaatagtttttgaagtttgaaaatattgtaaaaagattaaagaaatgtatttaatataatattttctaCATTTCTTATCTTGAAATTGCTACATGAGTTCAGTAGAATGATTTTACATAATCCAATCTTTGCAAACGATTTGAAAAAAGTCATGAAAATTATTTGTTGAAAAGTGTGGAAGCCCTGTTCTCTGTCTTTATTTTCCTATCAACATTTTTGTCGATCATGTAGACTCCCCACAGGCCTTAAATCGGGACGCATGTGAAGTGATGGATTACGCTTTATTTCTTCCTTGTTTATTTTGTGTGCTAATGTCTTGATGGGCATGCTAATAgtctttaaaaatattgaaaaatactACGCTTGATAGAATTTAGCCTACATTGAAAGACTACTATGTAATGGTTCAGAGACTAAAAAACAATGGTCAAAGCACAGAGAAAACATCCTGATCatggaaaaaaagagaaattttcagtattttgtcatttataaacctgaataatatttttgaaagtatttgaaaatcagtatttATGACTAAAATATATAGAAAGAGTATTAATATGTAAATGGACATTTATCCATATTTAAATATTCAGTATGTAGTCCACAGTTGACCAGTATGAGGCAAACATCATCGGTAAATGCCCCCG
>TCONS_00055375
TCCCAAAATTCATCAGCCCATCGCACCACGACAGAATGTCTGCAACATCAGCAAATCAGAAATGTACCTTGTCCGAGTGGGTATGCCAAGTGGATCATCAGTGGAGTTTGCTAAAAATCATGTTCTTGAGATTCTTCGACGAGAGTTTAACCGTTCAGTGGAGCTAAAGGTCCACAAATATCCACCCAATTTTATCTTTCGGGCTTTTTCTGGTCCACTGGTCTACACTGCTGTGTCAGTCATCAATGCTCTCCGCCAACCAATGCACAGCACATCGTCTTCTACCATTCTCTCTGTTACAACTATATATGCAGTGCCTGATTACAAGCATCAGGTCCACACAGTGCTGCAGTTTGTGCCAGGTCATGTGGATGTGCGTCTGTGTAGCTTTAGCGAGCGAGTGGAAAAGGGGCTCCTCATGGCATATGCGGAAGTGCGCAAACGCTCACAAGAAAATGGGAATTTCACAGTCCATGTATGAActctttttattaaaacaatatttgcaGCATTTACACATCacttttctttttcaca

Function

symbol description
si:dkeyp-27e10.3 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 86. Orthologous to human KIAA1549 (KIAA1549).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-96 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 86. Orthologous to human KIAA1549 (KIAA1549).

Ensembl:

ensembl_id ENSDARG00000063008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055374 False 8016 mRNA 0.44 20 9784301 9810999
TCONS_00055375 True 537 lncRNA 0.44 4 9798053 9801647

Neighbor

gene id symbol gene type direction distance location
XLOC_028544 svopl coding downstream 3169 9769050 ~ 9781132 (-)
XLOC_028543 mical3b coding downstream 19532 9724192 ~ 9764769 (-)
XLOC_028542 tspan9b coding downstream 61733 9696965 ~ 9722568 (-)
XLOC_028541 dmtf1 coding downstream 116891 9652216 ~ 9667410 (-)
XLOC_028540 BX901962.1 coding downstream 132333 9649283 ~ 9651968 (-)
XLOC_028546 parp12b coding upstream 2754 9813753 ~ 9822519 (-)
XLOC_028547 ttc41 coding upstream 13064 9824063 ~ 9836342 (-)
XLOC_028548 glt8d2 coding upstream 32924 9843923 ~ 9867843 (-)
XLOC_028549 adm2a coding upstream 69648 9880647 ~ 9891874 (-)
XLOC_028550 si:dkey-22l11.6 coding upstream 90117 9901116 ~ 9909371 (-)
XLOC_028534 NA non-coding downstream 262359 9514548 ~ 9521942 (-)
XLOC_028533 NA non-coding downstream 394653 9388818 ~ 9389648 (-)
XLOC_028527 NA non-coding downstream 733356 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 878848 8904291 ~ 8905453 (-)
XLOC_028551 NA non-coding upstream 535739 10346738 ~ 10348612 (-)
XLOC_028553 BX897748.1 non-coding upstream 850562 10661561 ~ 10661677 (-)
XLOC_028554 NA non-coding upstream 937978 10748977 ~ 10752941 (-)
XLOC_028555 NA non-coding upstream 955015 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding upstream 960875 10771874 ~ 10785654 (-)

Expression


Co-expression Network