XLOC_028546 (parp12b)


Basic Information

Item Value
gene id XLOC_028546
gene name parp12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9813753 ~ 9822519 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055376
ACCGAATCTTAGCACTACGTTATTGCAGTTTCCGCTTTCATTTATGTAGAAACGAAGACTCAAAAACATCGAAGTACAGTCAGACTGGAGCCCACCCGAGGCTCTCATCTCTATGTCCGATATGTCGGACTGCACTCGGGTCATACATTATGCGACCAGCATATTATGCAGCAATAAAGGCTCCATGGAAATGTCCCAGCTGCACCGGAGGGTCTTCCAGCGTTTTGAGATCAGCGAAGCAGATTTTTGGTACATCGTCAAGAAATGCGCCCGCTTCGTTATGGTCCAGAGCAGACCCGGAGAGGAGGATGCAGAATCAGACTGCACAGTTGTCGCCAAGACATCTCTGAGACTCTGCAAGAAATATTCCAAGAATGAATGTTACGAGTGCCAAGACTTGCACCTCTGCAAGTATTTTGTCTACGGGAACTGCAGATATGGAAAAGGAAGGAAGGAGTGTAAATTCTCTCATAACATCCAGTCACAGCATAACTATCCCCTGCTGCGCGAGTGTACGCTTCATGAACTGAACGAGGACGATCTTTTCCTGCTTCTACTCCAAAACGATCCCGCCCTGCTGCCAGAGGTGTGTGCTCACTATAATAAAGGCACGGGTGTTTTCGGGGCCTGTACCTTTATGGAGCGCTGCACTAAAGTGCACATTTGTCAGCACTTTGTGCACGATACCTGCCTGTTCGGGCCCAAGTGCAAACGGCAACACAGCATCGACGGGTACAGCCGCAGGATGCTGGAAGAACGTGGGCTCAGTGGTGACATCATCCGTGAACTGCCTTACATCTACCAGAATGTGTATCGGCTGAATTCGCAACCTCAAAGCAGTGAACTGATATCTGATCAAGGCATCAAACCGGTCGCTCAGATGGAGAAGAATGAAATCTGTCTCCACTTTATAAGACGGAAGTGCAAGTTTCAGGACCAGTGCGTTCTTGTCCACTTTAATCTTCCATATAAGTGGGAGCTTTACGATGGGAAAGGCTGGAGGGAATTAAGAAATATGGAGGACATAGAGAGAGCTTATTGTGACCCAAAGAATGAATACAGTCCAGGCTCAAGGCCAGTGAATTTTGTGTCCATGACCAAGAACGGTGACCCTGTGCGCCGGCTTTCTACAGTCTCCTCAGTCTCCAAACCCGCCCACTATTTCTTGACAACCCAGTGGATTTGGTACTACAAAGGAGATCATGAAAACTGGATAGAGTACGGTCATCCGGATGACAAGCAACGTGCCACTTCTGTCACATCCAGAGAGCTGGAGAAATCTTTTCAAGAGGACAATAATGCAGAAGTTACTGTCATAAAAGGCAATAGGCATTACTATGTCAGTTTCCAAGataTGTATCAGAGGAACCccaaacacaacacaaagagaAGGGTGCGGAGACGACCACGCTTTGTGTCTATCAGTGAGGTGGAAAGTAAAGCTGCCCAgtgacagaacaaacacacaacacactttATGCTCACACACCTGAGCACAGACATTCAAATTATGAGTTACTGCATTCATTTCTTGCCATTTAACTCTCACAAACTGTATGGATATAGTAAGGAACGTGCAGTTGCTTTGGGTATTAGTCAACTATATTCCTTCCATCATTTTTAACCATCAGAAAACGTGGCTGCATCTATTTCTATCTTTTAGCTCAAATGTCTCATTATTTTACCCTCCAATGGACATATGTATATACTGTGACTTCAGTGTGGTTTTACTGTGGGTTTTTCATGCCTGGATTTACCTACAGTGAACGTGGTATCTTTTTGGGTTGATGTGGATCAGCTCATGAGGTCTTTTTACAAATCATGTATTGGACAATAAACACATTTCTTTCC
>TCONS_00055377
ACCGAATCTTAGCACTACGTTATTGCAGTTTCCGCTTTCATTTATGTAGAAACGAAGACTCAAAAACATCGAAGTACAGTCAGACTGGAGCCCACCCGAGGCTCTCATCTCTATGTCCGATATGTCGGACTGCACTCGGGTCATACATTATGCGACCAGCATATTATGCAGCAATAAAGGCTCCATGGAAATGTCCCAGCTGCACCGGAGGGTCTTCCAGCGTTTTGAGATCAGCGAAGCAGATTTTTGGTACATCGTCAAGAAATGCGCCCGCTTCGTTATGGTCCAGAGCAGACCCGGAGAGGAGGATGCAGAATCAGACTGCACAGTTGTCGCCAAGACATCTCTGAGACTCTGCAAGAAATATTCCAAGAATGAATGTTACGAGTGCCAAGACTTGCACCTCTGCAAGTATTTTGTCTACGGGAACTGCAGATATGGAAAAGGAAGGAAGGAGTGTAAATTCTCTCATAACATCCAGTCACAGCATAACTATCCCCTGCTGCGCGAGTGTACGCTTCATGAACTGAACGAGGACGATCTTTTCCTGCTTCTACTCCAAAACGATCCCGCCCTGCTGCCAGAGGTGAGGAAATGCAAACAGGAAGGCTAATTTAGTCACCTAAATGTTTTTGGACTCCTTTCTCTTGAGAGAATTCCTGCCCAAAGCCGAACTCATGCTATGATTGGGATATTTCTGCATTCCAGGTACCTGTCCTGCCGTTTGAAACACCAATCTCCTTTCAGATGCGTTCAGAGTAGATCAGAGTTCACGTAACCGCTCATATGTTTGTTTTGGCATGCAAAAATCAGCTGCTTGGTTACACCCAAAAAAACAGCGTCACAAGTTTTGAAGTAATCGAATATTCGAGTATACATTTGGTCAACCAGAAAACACCAAGAATTTTTTGTAGTGTTATATCCCGGATAAGAAGCAATCTGTGCAATACCAccaattaaaatagattttttaaaagagaaacaaaGGAAAGAAAGGGTCAACCAGTAAACCGTCCAAGTGAAGTTCTGTTTCATCAGCGGTCCTGTCagtatgttaatgtatgaaaaagAATTGAGAAGAATTGTGGCCTTATTCAAGACGAAGAGTTGCTGATGATGGTTCTAAGATCTTCAGGTgtcaaaagtttg

Function

symbol description
parp12b Predicted to enable metal ion binding activity. Orthologous to several human genes including PARP12 (poly(ADP-ribose) polymerase family member 12).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2617 Predicted to enable metal ion binding activity. Orthologous to several human genes including PARP12 (poly(ADP-ribose) polymerase family member 12).

Ensembl:

ensembl_id ENSDARG00000057974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055376 False 1851 mRNA 0.45 8 9813753 9822519
TCONS_00055377 True 1149 lncRNA 0.44 2 9819357 9822519

Neighbor

gene id symbol gene type direction distance location
XLOC_028545 si:dkeyp-27e10.3 coding downstream 2754 9784301 ~ 9810999 (-)
XLOC_028544 svopl coding downstream 32621 9769050 ~ 9781132 (-)
XLOC_028543 mical3b coding downstream 48984 9724192 ~ 9764769 (-)
XLOC_028542 tspan9b coding downstream 91185 9696965 ~ 9722568 (-)
XLOC_028541 dmtf1 coding downstream 146343 9652216 ~ 9667410 (-)
XLOC_028547 ttc41 coding upstream 1544 9824063 ~ 9836342 (-)
XLOC_028548 glt8d2 coding upstream 21404 9843923 ~ 9867843 (-)
XLOC_028549 adm2a coding upstream 58128 9880647 ~ 9891874 (-)
XLOC_028550 si:dkey-22l11.6 coding upstream 78597 9901116 ~ 9909371 (-)
XLOC_028551 NA coding upstream 524219 10346738 ~ 10348612 (-)
XLOC_028540 BX901962.1 non-coding downstream 161785 9649283 ~ 9651968 (-)
XLOC_028534 NA non-coding downstream 291811 9514548 ~ 9521942 (-)
XLOC_028533 NA non-coding downstream 424105 9388818 ~ 9389648 (-)
XLOC_028527 NA non-coding downstream 762808 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 908300 8904291 ~ 8905453 (-)
XLOC_028553 BX897748.1 non-coding upstream 839042 10661561 ~ 10661677 (-)
XLOC_028554 NA non-coding upstream 926458 10748977 ~ 10752941 (-)
XLOC_028555 NA non-coding upstream 943495 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding upstream 949355 10771874 ~ 10785654 (-)

Expression


Co-expression Network