XLOC_002855 (opcml)


Basic Information

Item Value
gene id XLOC_002855
gene name opcml
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 30617826 ~ 30785501 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005287
TTTCCTCACCTATCCGAGCGCGAGAGCACCACCGACCGCGTTCTCTCTGTTTCCAGGAGTATTACTGCCTCTTTCCCCGCACGCAACCGGCTCGTTACTGCACTGAACATCCTCTGGCAGAATTTGTGCGGGTCTTATTAAAGAGTATTGAAAACGACGAGGCTCAGAACGAGGCTGAAGCATCTTTAAGAGCGCGCGCATCTCTCTGAGCGCGCGAGCAACATATGTGCTGCCTCTGAAGACGCGCTACAGCaccacagtgtgtctgataaacGACCGAATATACGTTTCAAAACGAAAACTTTCAAGGAATATTCTCGAGCATTTGAAGCGGATTTCCTCTCAGCCACACCGAGTAAAACTAATAGTTTTGGAGATATTTTAAAGACGGAATACGAAGTGAACGCTGCGTTCCGAGGGGAATCACATACACGCTCCTTCAGTAAAACGGTTGATCTTTGCGGACGGAAGTTTCTGAGTTTCCTCACGGAACAAAATGGGCATAACTGGTTATTTTGAGCTGCAGTGGAAATGCCTGGTTGTTGTGGCTCTAAGACTGCTGTTCCTTGTGCCCGCAGGAGTGCCAGCGAGAAGCGGAGACTCTTATTTAAAGGACAACATCACTGTCAGACAGGGAGACAGTGCTGTCTTGAAGTGCAGTGTGGACAACAAAGTATCACGGGTGGCATGGCTCAACCGGACCACCATCCTCTTCACGGGCAATGAGAAATGGTCATTGGACCCCCGGGTGGTTCTGCTAAACACAGCAGTCAATGAATACAGTATAAAGATCCTAAATGTGAACTTGTACGACGAGGGCCCGTATGTGTGTTCCATCCTCACGAACAAGAAACCAGAGTCGACCAAAGTGCACCTCATCGTACAAGttcctGCCAGGATTGTAAACGTTTCCACCGATGTTTCAGTGAACGAGGGCAGTAACGTAAGCCTCATGTGTCTGGCCATCGGAAGACCCGAACCCTCCATTTTGTGGAAATTTCGTTCTTCAAAAGGGAACCGTATCGTGACGGAGGGCGAATATGTGGAAATGACAGGAATCACTAAAGACATGTCAGGCTCATATGACTGCATCACTTCCAATGACATCTCACCTCCAGATGTCAGGACTGTCCAGGTCACTGTAAACTATCCGCCTGTCATTTCGAGAGCTCGCAGCACAGGAACGGCCGTCGGACAGAAAGGAGTGCTGTGGTGCGAGGCGTCTGCCGTTCCTCTTGCTGATTTTCAGTGGTTTAAAGGGGAGCGCAgAATCCTCAACGGATTCAACGGGGTCAAGATCGAAAACAAGGGGAAACAGTCCATGCTAACGTTCTTCAACGTCTCTGAGGAGGATTACGGCAACTACACCTGCGTGGCCATCAACACACTGGGAATAACAAATGCCAGCATCATTCTCTACGGCCCCGGAGCGATACACGATGTGAACAACGCAGCCTTATCGCCAACCTGCTCGCTCTTGCTTCTAACTCTGCTTTTAACCCTGTCGCTCCTCAGCAAGTTTTGATGCTAAAGCAGCGTTTCCGCTCGTccgaaaaacacacacacaagactcACAGTCCCACACACCGAGAACAGGGGAAAGTACTTGATCAGCTATTATTATTACCGCTTATCATTTTgccttatgttttatttctgaaGGCACGTGTCAGTGTGGGTTTCTGGGTCTGTAATGAGATGCTTTGGGGTTTAACCGTGTTTTGAAACAGTGAACTGGACTGTGAATGGAGTGGAGTTTGTTAGCTgggtagaaataataataataataataataataatagaaccaCTATATGTGTCTCTCCAACCTTTTGTATGTGAAAAGAGAAGCAAAAATTCATGTAATCGTGAATAACTGGATGGTTTTTTTGCTCAGTATTGAACAGTGTGAATTGAGGTTACTGGTGTGTCCTGTTTTCCTGTAAGAtaacatgtttctttttttctttctttttttaaagaataaatgaaaatgacaaacagcaaaaaagaaacaaacaaaaaacctttgaagaaaaaaaaaaaa

Function

symbol description
opcml Is expressed in nervous system. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OPCML (opioid binding protein/cell adhesion molecule like).

GO: NA

KEGG:

id description
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-040927-3 Is expressed in nervous system. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OPCML (opioid binding protein/cell adhesion molecule like).

Ensembl:

ensembl_id ENSDARG00000013005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005287 True 2044 mRNA 0.46 7 30617826 30785501

Neighbor

gene id symbol gene type direction distance location
XLOC_002854 CT737197.1 coding downstream 86569 30531143 ~ 30531257 (-)
XLOC_002853 lim2.1 coding downstream 714661 29896275 ~ 29903165 (-)
XLOC_002852 bsx coding downstream 725340 29890535 ~ 29892486 (-)
XLOC_002851 zpr1 coding downstream 785882 29820172 ~ 29831944 (-)
XLOC_002850 hist2h2l coding downstream 801359 29815644 ~ 29816467 (-)
XLOC_002856 panx3 coding upstream 211737 30997238 ~ 31016806 (-)
XLOC_002857 pknox2 coding upstream 234106 31019607 ~ 31220558 (-)
XLOC_002858 NA coding upstream 477351 31262852 ~ 31295006 (-)
XLOC_002859 robo3 coding upstream 513471 31298972 ~ 31563049 (-)
XLOC_002860 fez1 coding upstream 953000 31738501 ~ 31782616 (-)
XLOC_002845 CU861448.1 non-coding downstream 909644 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 1126739 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 1479822 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 1694193 28923517 ~ 28923633 (-)
XLOC_002862 NA non-coding upstream 1292310 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 1430912 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 1799184 32584685 ~ 32591462 (-)
XLOC_002870 NA non-coding upstream 1891309 32676810 ~ 32678245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_14753489_14803322 OPCML coding CI01000304 null 14753489 ~ 14803322 (-)
mexican tetra (Astyanax mexicanus) G179779 NA non-coding NC_035916.1 CM008319.1 28659992 ~ 28848744 (-)