XLOC_028550 (si:dkey-22l11.6)


Basic Information

Item Value
gene id XLOC_028550
gene name si:dkey-22l11.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9901116 ~ 9909371 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055386
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACACCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatggtggcgcagtgggaagcgctctcacctcacagcaagaaggtcgctagttcgattctcgactggatcagttggcatttctgtgtggagtctgcatgttctccccgcgttctcatgggtttcctccgggtgctccggtttcccccacaagtccaaagacatgcgctataggggaattggaCAACCAATGTCCATGTCAAAAAAGCTTCTTCAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGggCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTAATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGATTTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgtgtgtgtgtgagagagagagagcatgtgcaTTCTATAAACTTTGTATTTATTCCATTTCATACAACTTGTAGTTgctcaatttgttttttttttattttttaagttaattagttgattattttgtgtattggggtgtgtgtgtgtgtgtcataaggATTGCCGTTTGCTCCAAGACTTCATACAGTTTCTTTTATGTgttggtttaaattaaatgtgctgTACAAACTGTTTATTGTGTTATGGTGTGCTGCTAAAGCATTTTTAGGCAgtgatttatgttttgttaaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaaca
>TCONS_00058069
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACACCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatggtggcgcagtgggaagcgctctcacctcacagcaagaaggtcgctagttcgattctcgactggatcagttggcatttctgtgtggagtctgcatgttctccccgcgttctc
>TCONS_00055387
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACACCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatggtaagtaactgCAAAACATTTATCACTACACATTACAGTAAACAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactcaccatggttttaaacctttgagtttcttttatctgt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-251 No description available

Ensembl:

ensembl_id ENSDARG00000070126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055386 False 1266 mRNA 0.39 5 9901116 9909371
TCONS_00058069 False 313 lncRNA 0.48 3 9906081 9909371
TCONS_00055387 True 355 lncRNA 0.38 2 9907869 9909371

Neighbor

gene id symbol gene type direction distance location
XLOC_028549 adm2a coding downstream 9242 9880647 ~ 9891874 (-)
XLOC_028548 glt8d2 coding downstream 33273 9843923 ~ 9867843 (-)
XLOC_028547 ttc41 coding downstream 64774 9824063 ~ 9836342 (-)
XLOC_028546 parp12b coding downstream 78597 9813753 ~ 9822519 (-)
XLOC_028545 si:dkeyp-27e10.3 coding downstream 90117 9784301 ~ 9810999 (-)
XLOC_028551 NA coding upstream 437367 10346738 ~ 10348612 (-)
XLOC_028552 tspan12 coding upstream 665451 10574822 ~ 10599062 (-)
XLOC_028553 BX897748.1 coding upstream 752190 10661561 ~ 10661677 (-)
XLOC_028554 NA coding upstream 839606 10748977 ~ 10752941 (-)
XLOC_028555 NA coding upstream 856643 10766014 ~ 10835620 (-)
XLOC_028540 BX901962.1 non-coding downstream 249148 9649283 ~ 9651968 (-)
XLOC_028534 NA non-coding downstream 379174 9514548 ~ 9521942 (-)
XLOC_028533 NA non-coding downstream 511468 9388818 ~ 9389648 (-)
XLOC_028527 NA non-coding downstream 850171 9048306 ~ 9050945 (-)
XLOC_028525 NA non-coding downstream 995663 8904291 ~ 8905453 (-)
XLOC_028556 NA non-coding upstream 862503 10771874 ~ 10785654 (-)

Expression


Co-expression Network