G937849


Basic Information

Item Value
gene id G937849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6109783 ~ 6113302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1069626
CAAAATACAGTGCCAAAGAAACATGATACAGCCAAACATGCTAGTAAGGTTTGTCATGAAGCACCTGTGCTCATGTTTTAAAGTTGAAACCAGAACGCAGCGACGTCCGCTCTGTCCCAACCACCCTCCATTTTGTTCCGTTTCCACTACGGCTAGTGGTTGCTGGGACAATTCCCATAGCAACAGCCCTGGGCCAGCCCTCTTTCCTTCTCAGACCCAATCAGCAGCAAGAGTCCTCAATATTTCACTCACAAGAAAATGTCAAATCAGATAACGGAGGGTGGATACCTATACACAATcacactacagtaatgtctgatATTAAATACACTAATACAAAATAGAACCTGGTTATTTTCCCCCACACTAAAACAGTTTCTTTTTTTTAAgatatgaaaaatatatattttagtatATTTATTTCAGCAGCTTGGAAATAATGCATGAGCCCAAAAATCTATAGTTGTTGATAGAGTGAAGCAGGTGGTGTGTTGATGATAGTACTGAGAGTGCGTGAAGCAGGTGGTGTGTTgagagtactgagagagagaagcaggtggTGTGTTGATGATAGTACTGAGAGAGTGAAGCAGGTTGTGTGTTGATAGTACAGAGAGAGTGAAGCAGGTTGTGTGTTGATGAGAGTGCTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTACTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTACTGAGAGAGTGAAGCAGGTTGTGTGTTGATGAGAGTGCTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTGCTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTACTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTGCTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTGCTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTACTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTACTGAGAGAGTGAAGCAGGTGGTGTGTTGATGAGAGTGCTGAGAGATGTGTGTGGTTGCGAAGACCcgcataaaaaataaacaaaaaacagAGAGCCGGCATAAATCCTCCTATCACTATGCCGAGACGGAGGTCAGCTAGTGTCGGCGCTGTTCTGTAAACTTCCAGCTGGCTGTGAGGAAGACCTGTGTCCAGAAAGATTGACTAAGCATCCACAATGGCTCCCTACaaagggcactacttttgaccatagccctATGGGCGAGCTCAACACGTGTACGgttgccctatgggccctggtcaaaagtagttcactctgtagagaatagggagccattGTGGACGCACGACCTAGGAGACAGGCTAGAGGGGCGGTAAGTGTACCAGGGGAGAGACAGGTGCTTGTGTGGGTGTCTGGGACcgagaggtgaagagatgaccAGTGACAGGACCTGCAGTCACCACCCAGAACCCTCTCCCACACCTCCCCATTCCCACTGCGACACCTcagacctctcccctgtcccctggATGTTCCAATACCACGtgcatcccaaaatggcaccctaattctATATAAAAGCCACTTATTTTGGCAAGAAGCCTATAGAGCTCTCATCAAAAAAGTAGTGTCCTACACAcagggaatagggagtcatttgggacacaaggcAGGTGTCCCTGGGAAAGACACGTGGATTGAAATCAGTGTtgataaagagagatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1069626 True 1707 lncRNA 0.47 2 6109783 6113302

Neighbor

gene id symbol gene type direction distance location
LOC110536599 LOC106579705 coding upstream 11385 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 71461 6028660 ~ 6038322 (+)
LOC110535182 prdm14 coding upstream 670424 5432326 ~ 5439359 (+)
LOC110536532 LOC106579720 coding upstream 680337 5193181 ~ 5518848 (+)
LOC100136147 tram1 coding upstream 924976 5168887 ~ 5184807 (+)
LOC110535186 LOC106579708 coding downstream 14073 6127375 ~ 6139717 (+)
LOC110535188 LOC106579710 coding downstream 28413 6141715 ~ 6148083 (+)
LOC110535195 LOC106579699 coding downstream 139680 6252982 ~ 6498275 (+)
LOC110535194 LOC106579701 coding downstream 184403 6297705 ~ 6320962 (+)
LOC110536537 LOC106579698 coding downstream 232705 6346007 ~ 6353351 (+)
G937877 NA non-coding upstream 21056 6086737 ~ 6088727 (+)
G937822 NA non-coding upstream 107174 6002409 ~ 6002609 (+)
G937679 NA non-coding upstream 121740 5987839 ~ 5988043 (+)
G937665 NA non-coding upstream 162564 5946943 ~ 5947219 (+)
G937888 NA non-coding downstream 7702 6121004 ~ 6121534 (+)
G937889 NA non-coding downstream 8282 6121584 ~ 6122269 (+)
G937892 NA non-coding downstream 20147 6133449 ~ 6134025 (+)
G937851 NA non-coding downstream 35125 6148427 ~ 6148791 (+)
G937899 NA non-coding downstream 53802 6167104 ~ 6167691 (+)
G937237 NA other upstream 604454 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 965218 5143317 ~ 5144565 (+)
G937051 NA other upstream 1081638 5019905 ~ 5028145 (+)
G935977 NA other upstream 2127585 3981851 ~ 3982198 (+)
G935976 NA other upstream 2128632 3980771 ~ 3981151 (+)
G938723 NA other downstream 905849 7019151 ~ 7021424 (+)
G939408 NA other downstream 1461050 7574352 ~ 7574909 (+)
G939544 NA other downstream 1707218 7820520 ~ 7823317 (+)
G939690 NA other downstream 2026964 8140266 ~ 8140583 (+)

Expression


Co-expression Network