G937889


Basic Information

Item Value
gene id G937889
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6121584 ~ 6122269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1069682
CCAAactggaatgttttttttaaattaaaataaaactaCTTGAGGCCCAGAGAGACCTCGCTGCTCTGTGACATCAGATAGACAGAACAGACGTGTCCCAGGACCAGGTTAAAGTACTTCTGcagcaaaacaacaacaaaaacagccaACTCCTCCTGTTTCCCCACTGATGGATGAGAGCAGGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTCCTCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTAGCATCCTCTCAACTGGGCTCTCTGTCTGTAGGGCGTTGTGGTGGTGTCTAGAACCTCCAGAGTAGACCTGTCAGTTCTGGTGGGTCAGTCTCGGCTGTGTTGTCACTCCTTGCTCTGTATAGCCCAGACAGACAGGTCTCTCCCAGggcatacagagagacagacgggcaggCACAAGGGACTGGATGGAGGTAGTGGGGATGGTGACACTGCTACATCAGTTCTGGGCTGAAAACACAACAG
>TU1069683
CCAAactggaatgttttttttaaattaaaataaaactaCTTGAGGCCCAGAGAGACCTCGCTGCTCTGTGACATCAGATAGACAGAACAGACGTGTCCCAGGACCAGGTTAAAGTACTTCTGcagcaaaacaacaacaaaaacagccaACTCCTCCTGTTTCCCCACTGATGGATGAGAGCAGGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTCCTCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTAGCATCCTCTCAACTGGGCTCTCTGTCTGTAGGGCGTTGTGGTGGTGTCTAGAACCTCCAGAGTAGACCTGTCAGTTCTGGTGGGTCAGTCTCGGCTGTGTTGTCACTCCTTGCTCTGTATAGCCCAGACAGACAGGTCTCTCCCAGggcatacagagagacagacgggcaggCACAAGGGACTGGATGGAGGTAGTGGGGATGGTGACACTGCTACATCAGTTCTGGGCTGAAAACACAACAG
>TU1069684
CCAAactggaatgttttttttaaattaaaataaaactaCTTGAGGCCCAGAGAGACCTCGCTGCTCTGTGACATCAGATAGACAGAACAGACGTGTCCCAGGACCAGGTTAAAGTACTTCTGcagcaaaacaacaacaaaaacagccaACTCCTCCTGTTTCCCCACTGATGGATGAGAGCAGGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTCCTCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTAGCATCCTCTCAACTGGGCTCTCTGTCTGTAGGGCGTTGTGGTGGTGTCTAGAACCTCCAGAGTAGACCTGTCAGTTCTGGTGGGTCAGTCTCGGCTGTGTTGTCACTCCTTGCTCTGTATAGCCCAGACAGACAGGTCTCTCCCAGggcatacagagagacagacgggcaggCACAAGGGACTGGATGGAGGTAGTGGGGATGGTGACACTGCTACATCAGTTCTGGGCTGAAAACACAACAG
>TU1069685
CCAAactggaatgttttttttaaattaaaataaaactaCTTGAGGCCCAGAGAGACCTCGCTGCTCTGTGACATCAGATAGACAGAACAGACGTGTCCCAGGACCAGGTTAAAGTACTTCTGcagcaaaacaacaacaaaaacagccaACTCCTCCTGTTTCCCCACTGATGGATGAGAGCAGGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCTCTCAGCAGGGAGACCAATCAGGTCGGTTTCCTCTCTCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTTGGTTTCCTCTCTCAGCAGGGAGACCAATCAGGTAGCATCCTCTCAACTGGGCTCTCTGTCTGTAGGGCGTTGTGGTGGTGTCTAGAACCTCCAGAGTAGACCTGTCAGTTCTGGTGGGTCAGTCTCGGCTGTGTTGTCACTCCTTGCTCTGTATAGCCCAGACAGACAGGTCTCTCCCAGggcatacagagagacagacgggcaggCACAAGGGACTGGATGGAGGTAGTGGGGATGGTGACACTGCTACATCAGTTCTGGGCTGAAAACACAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1069682 False 617 lncRNA 0.51 3 6121584 6122269
TU1069683 False 651 TUCP 0.52 2 6121584 6122269
TU1069684 False 617 lncRNA 0.52 3 6121584 6122269
TU1069685 True 592 lncRNA 0.51 4 6121584 6122269

Neighbor

gene id symbol gene type direction distance location
LOC110536599 LOC106579705 coding upstream 23186 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 83262 6028660 ~ 6038322 (+)
LOC110535182 prdm14 coding upstream 682225 5432326 ~ 5439359 (+)
LOC110536532 LOC106579720 coding upstream 692138 5193181 ~ 5518848 (+)
LOC100136147 tram1 coding upstream 936777 5168887 ~ 5184807 (+)
LOC110535186 LOC106579708 coding downstream 5106 6127375 ~ 6139717 (+)
LOC110535188 LOC106579710 coding downstream 19446 6141715 ~ 6148083 (+)
LOC110535195 LOC106579699 coding downstream 130713 6252982 ~ 6498275 (+)
LOC110535194 LOC106579701 coding downstream 175436 6297705 ~ 6320962 (+)
LOC110536537 LOC106579698 coding downstream 223738 6346007 ~ 6353351 (+)
G937888 NA non-coding upstream 50 6121004 ~ 6121534 (+)
G937849 NA non-coding upstream 8282 6109783 ~ 6113302 (+)
G937877 NA non-coding upstream 32857 6086737 ~ 6088727 (+)
G937822 NA non-coding upstream 118975 6002409 ~ 6002609 (+)
G937892 NA non-coding downstream 11180 6133449 ~ 6134025 (+)
G937851 NA non-coding downstream 26158 6148427 ~ 6148791 (+)
G937899 NA non-coding downstream 44835 6167104 ~ 6167691 (+)
G937923 NA non-coding downstream 99013 6221282 ~ 6222049 (+)
G937925 NA non-coding downstream 102510 6224779 ~ 6225211 (+)
G937237 NA other upstream 616255 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 977019 5143317 ~ 5144565 (+)
G937051 NA other upstream 1093439 5019905 ~ 5028145 (+)
G935977 NA other upstream 2139386 3981851 ~ 3982198 (+)
G935976 NA other upstream 2140433 3980771 ~ 3981151 (+)
G938723 NA other downstream 896882 7019151 ~ 7021424 (+)
G939408 NA other downstream 1452083 7574352 ~ 7574909 (+)
G939544 NA other downstream 1698251 7820520 ~ 7823317 (+)
G939690 NA other downstream 2017997 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 2074099 8195607 ~ 8379328 (+)

Expression


Co-expression Network