XLOC_028552 (tspan12)


Basic Information

Item Value
gene id XLOC_028552
gene name tspan12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10574822 ~ 10599062 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055388
GAGGTGTTTATAGCTGGCCCGCAGTGAAGTAACCAAAGCCAGGAATGAGAGTGACAGTGAATGAATCTCCGTGAACACGCCCGACTGCTGCGCGCGGCTCTGACAGGAATATAAATATGATTTTGCATTACTGTCGCAACTAAGTTTGAGGAGTTTCCTACAACTTCATGCTGGAGACTCTGCGCTCTTCTATTTTTCCTTATTGGATACTCCAGGGAGTCAAAACTACCATGACATATACGGATTAATTTTATAAACTTTCAAGAGGAGAAAATTACAACCTGTTACTGTGTTTAAAATCACACGCTGCTTTTGAAATCTCCCACGGATATTTGGCTGCAACATCATATCAAGACTTTATGGATGCGCACTGAACGCGCACAAGGATTTATGACAAGTGGTTATGGTGCCGTGGTGGCAGAAGTTAAAATGAGGTCTTTTGGCGAGCAGTTGGTGCGCTCAGAATGGCCCGGGAGGATTCGGTGAAATGTCTGCGCTGTCTGCTCTACGCGCTCAACTTTCTCTTCTGGCTTATGGCCCTGTGTGTGCTGGGAGTGTCTGCCTACCTCAGGGATCAGCTGAACAATGTGCTTACCTTAACCGCCGACACCAGACTGGAGGAGGCAGCCGTTCGCACATACTCCCCCGTGGTCCATCCTGTCGTCATCGCCGTGTGCTGTTTTCTAATCATCGTGGCCATGGTGGGTTACTGCGGCACGCTCAAGTGCAATCTGCTCCTACTGTCTTGgTATTTTGGCAGTCTGATGGTGATATTCTGCGTGGAGCTGGCCAGTGGAGTGTGGACATATGACGAGCCTATGGTACAGAGGTCTGATATGATAAGTCTAAAGTCACGCATGCCTCATTTTGGCCTGCAGCGTTACCAGTGGCTGACACACGCCTGGAATGCTTTACAGACAGAGCTGAAGTGTTGTGGAGTGATCTACTTCACTGATTGGCTGGAAATGACAGAGATGGAGTGGCCACCTGACTCCTGCTGCTCCAATCAGTATCCAGGCTGTGCTCGCCAGGCCCACTATAATGACCTCAGTGACCTTTACCAGGAGGGCTGCGGTCCCAAGATCTACAGTTTTATCCGGGGCACCAAGCAATTACAGGTCTTGAGGTTTTTGGGTGTTTCGATCGGAGTGGCCCAGATCTTAGCCATGACTCTGACAGTGACTCTTCTATGGGCTCTCTATTATGACCACAAACCACCTGAGCCGGCATCAGCTGATGCCTTAATCCACACACACAGTCCCACCGAAGACCCTCTGAAGGTCAGCCACTCACACCCAAGAGCGTCCGAAGCCTGGGCAAACACACCCGCCAATGGACATACCCAATTCGAGATGGAGCAACTTTCCTAGCAGTAACTGTATGGCAGTGGAGGCAGTAAAAATGATGCTCATGCCCCACTGACACTAAACTGAACGGACAGCAGCGAAACTGGATCATAGTAGTTTCTGGGTGCTTGGATGACAAGATTTCTGTAGTGAACAGATGGAAAACTCTATATGTCTGTGGATAAAACATTTTTGTGGACATTATAAGGAAAGATGAAGAGGATTTACTGAGTTTTTCCCAAATAAAGGCATTGCCTTGGTCTCTATAGAGTAGAGTTCTCTAGAGGGAAGTTTCCGgaatgaattttttattattattcctccTCTCAACAGGATGGGACTTTTCCACCACATATAGTGACCTAGTTACTAACCACTAAGCTAACTGGGTGCTCACTTTGTTACTGTATTTTGCTTGTGTGAGACAAGAATTGGGAGACTCTTGGCCTTtgaagccacaaaaaaaaaaaaaaaattataaagagaCCTCTCTACATGCTCAGTT

Function

symbol description
tspan12 Predicted to be involved in several processes, including regulation of angiogenesis; regulation of vascular endothelial growth factor signaling pathway; and retina layer formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 5. Orthologous to human TSPAN12 (tetraspanin 12).

GO:

id name namespace
GO:1900746 regulation of vascular endothelial growth factor signaling pathway biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1285 Predicted to be involved in several processes, including regulation of angiogenesis; regulation of vascular endothelial growth factor signaling pathway; and retina layer formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 5. Orthologous to human TSPAN12 (tetraspanin 12).

Ensembl:

ensembl_id ENSDARG00000032389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055388 True 1851 mRNA 0.47 8 10574822 10599062

Neighbor

gene id symbol gene type direction distance location
XLOC_028551 NA coding downstream 226210 10346738 ~ 10348612 (-)
XLOC_028550 si:dkey-22l11.6 coding downstream 665451 9901116 ~ 9909371 (-)
XLOC_028549 adm2a coding downstream 682948 9880647 ~ 9891874 (-)
XLOC_028548 glt8d2 coding downstream 706979 9843923 ~ 9867843 (-)
XLOC_028547 ttc41 coding downstream 738480 9824063 ~ 9836342 (-)
XLOC_028553 BX897748.1 coding upstream 62499 10661561 ~ 10661677 (-)
XLOC_028554 NA coding upstream 149915 10748977 ~ 10752941 (-)
XLOC_028555 NA coding upstream 166952 10766014 ~ 10835620 (-)
XLOC_028556 NA coding upstream 172812 10771874 ~ 10785654 (-)
XLOC_028557 si:ch211-161n3.5 coding upstream 327109 10926171 ~ 10931729 (-)
XLOC_028540 BX901962.1 non-coding downstream 922854 9649283 ~ 9651968 (-)
XLOC_028534 NA non-coding downstream 1052880 9514548 ~ 9521942 (-)
XLOC_028533 NA non-coding downstream 1185174 9388818 ~ 9389648 (-)
XLOC_028527 NA non-coding downstream 1523877 9048306 ~ 9050945 (-)
XLOC_028568 BX784029.1 non-coding upstream 525551 11124613 ~ 11132617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_06272024_06286697 NA coding CI01000020 null 6272024 ~ 6286956 (+)