G937952 (LOC106579700)


Basic Information

Item Value
gene id G937952
gene name LOC106579700
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6293727 ~ 6295153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1069768
ATCGAGGGAGTTGTTGGAGCTGGGTCTGTTCTGGACCGGTGTGACAGCAGAGGGCATACTGTGGTAGGAGGTTGAGGTGGCCATATCCATGGCCTCCACTGAGCCCAGGCTGAGGCGTGAGCTCCCCGACATGTTGGAGCGGTTGATGGAGCTGCAGTAGCTCCGGAAGGCCACCACGTTCCTGGGCTTGAGGAACGAGGGTGACATGGCCACCCTGGGGTGCAGCTCAGGGACTCGGTCAAGGAAGGAGCGTTTGGATTCGCCTCCTCTCAGGGTGAGCCCGTTGCCCGGCTTTGCTGTTCCTGTACTAGCAAAGATGGGTGGCTGAGGAAGGAGTGGGGTACTGGGTGATATTGCTGGGTCATATGGTCTATCGTCTAGCTCGAACAATGCCCAATGCCCCTCTTTGGCACTTTGAGCCGAAGAGGGGGTTGGGCTGTTGTCGATGGACATTTCATGAGCCGACCCCTTAGAGTCTGCGCACAGGCTCCTGCTCAGCTCGTGGTCTTCACCAAATGACGTGCCTTCGATGAAGACCCCCTCTGCTGGTCCGTCCAACTCACACAGGAGGTTTTTAGCCAAAGCGATGGGACTGGAAAGTTTAGGGGCCTGGCCTTCAGAAGTCTCTTGACCCTCAGGTCCAAACACCTCCAAATGGACATTTGCAAACACCCCTGTCAGGCCAGTGCGATTCTTCAAATCAATATCTGGGACGCCAGAACACCTCTGGTACGCTGAGTCGCTCTTCTTGGAAAGGGATTCCAACTGTTCAGAActtctctccacctcctcaaACACTCTCTTTCCTGCTGCGGTTACCACAACATGGCCTTCCTTTGGTTTACCTTCGGTGGCACAGTGACCTTCAACTCCAGAAACATAGCCTCTGATTGGTTGAGAGAGATCAGGCTTCTGGGGTGGGGTAGACTGCTCTACCTCGTTAAACTGAAGCCTCTTCCAAGCAAGAGGTTCCTCTTTGGCCTTCCTGGACAGTTCACCAGTACTGGGTTCTCGGTGGAGCTGTCCACGTAGGTCTAAGTTGTCTAACGACGCCAGAGCAGAGTCCCGGCGTTGCAGTCGCATATCAGAGGTCAACTTTCCTTTTGTTGGTCCACTGGTATTCCTACCATATAGGTGCAGgaagttctctctctccttCTCGGAGTCCGTGGTGGAGGGGAAGAGGCATGATTGGCTGCTGCCTGCGCTCATTGTGTCAAACCTCCTTCTGGACTTAAGCAGCCTGGGAGTCAGGCTCTTGGTCAACGCATTTGGGCTGAACACAAAG

Function

NR:

description
serine/threonine-protein kinase greatwall-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1069768 True 1288 lncRNA 0.55 2 6293727 6295153

Neighbor

gene id symbol gene type direction distance location
LOC110535195 LOC106579699 coding upstream 9020 6252982 ~ 6498275 (+)
LOC110535188 LOC106579710 coding upstream 145644 6141715 ~ 6148083 (+)
LOC110535186 LOC106579708 coding upstream 154010 6127375 ~ 6139717 (+)
LOC110536599 LOC106579705 coding upstream 195329 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 255405 6028660 ~ 6038322 (+)
LOC110535194 LOC106579701 coding downstream 2552 6297705 ~ 6320962 (+)
LOC110536537 LOC106579698 coding downstream 50854 6346007 ~ 6353351 (+)
LOC110536538 LOC106579687 coding downstream 84291 6379444 ~ 6480492 (+)
LOC110536540 NA coding downstream 364275 6659428 ~ 6675322 (+)
LOC110535201 LOC106579689 coding downstream 717195 7012348 ~ 7051408 (+)
G937948 NA non-coding upstream 3049 6290195 ~ 6290678 (+)
G937942 NA non-coding upstream 19111 6274066 ~ 6274616 (+)
G937930 NA non-coding upstream 57588 6235238 ~ 6236139 (+)
G937925 NA non-coding upstream 68516 6224779 ~ 6225211 (+)
G937923 NA non-coding upstream 71678 6221282 ~ 6222049 (+)
G937955 NA non-coding downstream 12666 6307819 ~ 6310140 (+)
G937951 NA non-coding downstream 25917 6321070 ~ 6321981 (+)
G937966 NA non-coding downstream 45811 6340964 ~ 6341310 (+)
G937973 NA non-coding downstream 61479 6356632 ~ 6357043 (+)
G937975 NA non-coding downstream 64265 6359418 ~ 6360293 (+)
G937889 NA other upstream 171458 6121584 ~ 6122269 (+)
G937237 NA other upstream 788398 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1149162 5143317 ~ 5144565 (+)
G937051 NA other upstream 1265582 5019905 ~ 5028145 (+)
G935977 NA other upstream 2311529 3981851 ~ 3982198 (+)
G938723 NA other downstream 723998 7019151 ~ 7021424 (+)
G939408 NA other downstream 1279199 7574352 ~ 7574909 (+)
G939544 NA other downstream 1525367 7820520 ~ 7823317 (+)
G939690 NA other downstream 1845113 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1901215 8195607 ~ 8379328 (+)

Expression


Co-expression Network