G938089


Basic Information

Item Value
gene id G938089
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6579964 ~ 6581867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1069932
ACATGAGGGAGCTTTAATGCATGAGGGAGCTTTAATGCataagggagagcgagagggtcAACGCAGAGTAGCAGTCATGTGAGTGACGAGGGggaacagggacagggagagagatagtctACCAGCGCGAGTTGACTTGGATGCTAtcttattgttatttatttatcatGTCATTACATAGATGCTGGATTGGTATAGGGAacattagagtatcatgtagtatcctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatgacactatcctaaacctgtcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcgctgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctgtcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcaccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctgtcactgttacattgaactgggtgaatggaatatgaatgacagtatcctaaacctatcactgttacattgaactgggtgaatatgaatgacagtaacctaaacctgtcactgttacattgaactgggtgaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctgtcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatggatgttacattgaactgggtgaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcgctgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctgtcactgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcaccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcactgttacattgaactgggtgaatggaatatgaatgacagtatccTAAACCTGTCAccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcaccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcaccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaacctatcaccgttacattgaactgggtgaatggaatatgaatgacagtaacctaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1069932 True 1799 lncRNA 0.38 2 6579964 6581867

Neighbor

gene id symbol gene type direction distance location
LOC110536538 LOC106579687 coding upstream 99472 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 226613 6346007 ~ 6353351 (+)
LOC110535194 LOC106579701 coding upstream 259002 6297705 ~ 6320962 (+)
LOC110535195 LOC106579699 coding upstream 295257 6252982 ~ 6498275 (+)
LOC110535188 LOC106579710 coding upstream 431881 6141715 ~ 6148083 (+)
LOC110536540 NA coding downstream 77561 6659428 ~ 6675322 (+)
LOC110535201 LOC106579689 coding downstream 430481 7012348 ~ 7051408 (+)
LOC110535202 LOC106579690 coding downstream 788976 7370843 ~ 7427263 (+)
LOC110535203 LOC106579691 coding downstream 865547 7447414 ~ 7502456 (+)
LOC110536543 LOC106579684 coding downstream 1381142 7963009 ~ 7969001 (+)
G938069 NA non-coding upstream 31201 6548131 ~ 6548763 (+)
G938045 NA non-coding upstream 65377 6514231 ~ 6514587 (+)
G938038 NA non-coding upstream 75873 6502689 ~ 6504091 (+)
G938025 NA non-coding upstream 94300 6482265 ~ 6485664 (+)
G938024 NA non-coding upstream 98263 6480682 ~ 6481701 (+)
G938358 NA non-coding downstream 32233 6614100 ~ 6617787 (+)
G938366 NA non-coding downstream 40928 6622795 ~ 6669363 (+)
G938516 NA non-coding downstream 180837 6762704 ~ 6762904 (+)
G938531 NA non-coding downstream 190203 6772070 ~ 6773505 (+)
G938694 NA non-coding downstream 397687 6979554 ~ 6984573 (+)
G937889 NA other upstream 457695 6121584 ~ 6122269 (+)
G937237 NA other upstream 1074635 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1435399 5143317 ~ 5144565 (+)
G937051 NA other upstream 1551819 5019905 ~ 5028145 (+)
G935977 NA other upstream 2597766 3981851 ~ 3982198 (+)
G938723 NA other downstream 437284 7019151 ~ 7021424 (+)
G939408 NA other downstream 992485 7574352 ~ 7574909 (+)
G939544 NA other downstream 1238653 7820520 ~ 7823317 (+)
G939690 NA other downstream 1558399 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1614501 8195607 ~ 8379328 (+)

Expression


Co-expression Network