G938358


Basic Information

Item Value
gene id G938358
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6614100 ~ 6617787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1070296
atGTAAACACATTGATTCTCATTGCCAATAGGCTCAGGATAACTCCTCATAAGGTTGGCTAGTTGATATCTAGAGCTTAAATAGCCTAAATGATTAGTCACAGGAATACAGCCAATACAACCAGCTTGTTTAACAAACAGTAGGCCTATCACATGCTTGGGCATTCATAAACTTCAATATTAATTTGTTGCAGCCCAGACcggccttgatttcaacatccacggaccggaccaaatctgaaccaatcatggaCGTTTATGTTTTACAAGTTCAGACCAGCCTTGATCTGGCCCAAACATTtaactggaccaaatctgaatcAATCACAAACATCTATGTTTCACTAGTTTGAACagcacagtacattacagtacagtaaagaaaagtagagtacagtacaatatagtactgtggagcaacatagagtacagtacaatatagtactgtggagcacagtagagtacagtacaatatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtgcagcaacagtagagtacagtacaatatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcacagtagagtacaaccaAAGATAGTACTGCATGAAGATAGGCATAAACTGTTTCTCCGATAGAAATCTGCGATAACACTTGGCAGGATATGTCATGGCTATGTTGGCTATCTAAGCACCTGCACAGAAACATGTTATCGGGTATAACGGTCGTCTCATATCGAACTGCGAATGTGTAGGCCTTTCAAATCGTAGGCACTCATTCGGAATAAAGTTGATTTTGGCGAAAATTAAAACGGCAAAAAGAAAGGAAGAATTTTTCAATTCTCTTGCGAATTctcgcctctgggtttagaaactctgtggtacaacagtacagcacagtagagtacagttcagtataatgtactgtaccataatgtactgtaatgtacccTGTTCAAggaactttcattcagaacctaaaaTTAACCTAATTTCAACAATTTGAGAAAGACGTCAATACCAACTGACATACCTTTGTATACCTCCTCgtctgtatacctgcagacacaaaagtgagcagtacagtcatctgcacccaatagAGCTAGCCTTCATTATATTCTTATAGTGTAACgattgtcgtctggggaaggagaggaggaccaaggtgcagcgtggtaagtgttcatattatttaatgaaatatgcaacactagacaaaacaaacaaacaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacagtcctgaaccgtgaaacaaaaacactaaacaggaaacaaccacccacaaaacacaatggaaaacaggctgcctaaatatggttctcaatcagggacaacgattgacagctgcctctgattgagaaccataccaggccaaacacagaaatagaaaatcatagacaaactaacatagacaacccacccaactcacgccctgaccatactaaaacaaaagac

Function

NR:

description
uncharacterized protein LOC111609900

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1070296 True 2078 lncRNA 0.40 3 6614100 6617787

Neighbor

gene id symbol gene type direction distance location
LOC110536538 LOC106579687 coding upstream 133608 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 260749 6346007 ~ 6353351 (+)
LOC110535194 LOC106579701 coding upstream 293138 6297705 ~ 6320962 (+)
LOC110535195 LOC106579699 coding upstream 329393 6252982 ~ 6498275 (+)
LOC110535188 LOC106579710 coding upstream 466017 6141715 ~ 6148083 (+)
LOC110536540 NA coding downstream 41641 6659428 ~ 6675322 (+)
LOC110535201 LOC106579689 coding downstream 394561 7012348 ~ 7051408 (+)
LOC110535202 LOC106579690 coding downstream 753056 7370843 ~ 7427263 (+)
LOC110535203 LOC106579691 coding downstream 829627 7447414 ~ 7502456 (+)
LOC110536543 LOC106579684 coding downstream 1345222 7963009 ~ 7969001 (+)
G938089 NA non-coding upstream 32233 6579964 ~ 6581867 (+)
G938069 NA non-coding upstream 65337 6548131 ~ 6548763 (+)
G938045 NA non-coding upstream 99513 6514231 ~ 6514587 (+)
G938038 NA non-coding upstream 110009 6502689 ~ 6504091 (+)
G938025 NA non-coding upstream 128436 6482265 ~ 6485664 (+)
G938366 NA non-coding downstream 5008 6622795 ~ 6669363 (+)
G938516 NA non-coding downstream 144917 6762704 ~ 6762904 (+)
G938531 NA non-coding downstream 154283 6772070 ~ 6773505 (+)
G938694 NA non-coding downstream 361767 6979554 ~ 6984573 (+)
G938732 NA non-coding downstream 413871 7031658 ~ 7035460 (+)
G937889 NA other upstream 491831 6121584 ~ 6122269 (+)
G937237 NA other upstream 1108771 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1469535 5143317 ~ 5144565 (+)
G937051 NA other upstream 1585955 5019905 ~ 5028145 (+)
G935977 NA other upstream 2631902 3981851 ~ 3982198 (+)
G938723 NA other downstream 401364 7019151 ~ 7021424 (+)
G939408 NA other downstream 956565 7574352 ~ 7574909 (+)
G939544 NA other downstream 1202733 7820520 ~ 7823317 (+)
G939690 NA other downstream 1522479 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1578581 8195607 ~ 8379328 (+)

Expression


Co-expression Network