G938531


Basic Information

Item Value
gene id G938531
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6772070 ~ 6773505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1070474
GGACAAGGAAAAGGAGACATGAAAGAAGTAGGACAGGTTGCCAGAGAAGTGCAGATTCTAACTGATATATTCAATGTATTCTTGCTGCTTTTTCCTGCAGAATTTTGTTCTTCCTCCCTAATTGTGTCCCCTAAATGCCTACTCACAACCAATCATAATCTTTTCTGCTCTAAGAACATGTCTGAGTAAGTAAAACTCCCGTCAGCCTAGCATGTGGCATttattatttatgtattattttgCTCACCAAGagaggagtttttgtatggaggtcaatgagagtgtcGAAAATggtaaacaaaaaaaatgtaatggcaTATTTGctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgtggcttt
>TU1070475
GGACAAGGAAAAGGAGACATGAAAGAAGTAGGACAGGTTGCCAGAGAAGTGCAGATTCTAACTGATATATTCAATGTATTCTTGCTGCTTTTTCCTGCAGAATTTTGTTCTTCCTCCCTAATTGTGTCCCCTAAATGCCTACTCACAACCAATCATAATCTTTTCTGCTCTAAGAACATGTCTGAGTAAGTAAAACTCCCGTCAGCCTAGCATGTGGCATttattatttatgtattattttgCTCACCAAGagaggagtttttgtatggaggtcaatgagagtgtcGAAAATggtaaacaaaaaaaatgtaatggcaTATTTGctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgattcttcgagggtgactgtttatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgtggcttt
>TU1070476
GGACAAGGAAAAGGAGACATGAAAGAAGTAGGACAGGTTGCCAGAGAAGTGCAGATTCTAACTGATATATTCAATGTATTCTTGCTGCTTTTTCCTGCAGAATTTTGTTCTTCCTCCCTAATTGTGTCCCCTAAATGCCTACTCACAACCAATCATAATCTTTTCTGCTCTAAGAACATGTCTGAGTAAGTAAAACTCCCGTCAGCCTAGCATGTGGCATttattatttatgtattattttgCTCACCAAGagaggagtttttgtatggaggtcaatgagagtgtcGAAAATggtaaacaaaaaaaatgtaatggcaTATTTGctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctggttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgattcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgtggcttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1070474 False 838 lncRNA 0.46 2 6772070 6773505
TU1070475 False 1137 lncRNA 0.47 2 6772070 6773505
TU1070476 True 1137 lncRNA 0.47 2 6772070 6773505

Neighbor

gene id symbol gene type direction distance location
LOC110536540 NA coding upstream 96748 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 291578 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 418719 6346007 ~ 6353351 (+)
LOC110535194 LOC106579701 coding upstream 451108 6297705 ~ 6320962 (+)
LOC110535195 LOC106579699 coding upstream 487363 6252982 ~ 6498275 (+)
LOC110535201 LOC106579689 coding downstream 238843 7012348 ~ 7051408 (+)
LOC110535202 LOC106579690 coding downstream 597338 7370843 ~ 7427263 (+)
LOC110535203 LOC106579691 coding downstream 673909 7447414 ~ 7502456 (+)
LOC110536543 LOC106579684 coding downstream 1189504 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 1196422 7969927 ~ 7971811 (+)
G938516 NA non-coding upstream 9166 6762704 ~ 6762904 (+)
G938366 NA non-coding upstream 102707 6622795 ~ 6669363 (+)
G938358 NA non-coding upstream 154283 6614100 ~ 6617787 (+)
G938089 NA non-coding upstream 190203 6579964 ~ 6581867 (+)
G938069 NA non-coding upstream 223307 6548131 ~ 6548763 (+)
G938694 NA non-coding downstream 206049 6979554 ~ 6984573 (+)
G938732 NA non-coding downstream 258153 7031658 ~ 7035460 (+)
G938889 NA non-coding downstream 289728 7063233 ~ 7063485 (+)
G938915 NA non-coding downstream 308638 7082143 ~ 7082544 (+)
G937889 NA other upstream 649801 6121584 ~ 6122269 (+)
G937237 NA other upstream 1266741 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1627505 5143317 ~ 5144565 (+)
G937051 NA other upstream 1743925 5019905 ~ 5028145 (+)
G935977 NA other upstream 2789872 3981851 ~ 3982198 (+)
G938723 NA other downstream 245646 7019151 ~ 7021424 (+)
G939408 NA other downstream 800847 7574352 ~ 7574909 (+)
G939544 NA other downstream 1047015 7820520 ~ 7823317 (+)
G939690 NA other downstream 1366761 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1422863 8195607 ~ 8379328 (+)

Expression


Co-expression Network