XLOC_028556


Basic Information

Item Value
gene id XLOC_028556
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10771874 ~ 10785654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055391
aaaaatattacaattttcccaaatgtatataactactactgtaagaaaatatcagaattcggtacacaCTTTCTGAATTATCTTTGCATGAATTAAGCCGATCTATTCCTGTTTATAGGACTTAAACCTGcttccgaccaggtttgagctagcagaactgttgctatgataATAAGtctcagatcagttttgaagaacgaaacgatcctggatcatatcaaatcgtcaataaccaaatccagctaactgagtaatccacgtacgaagaacggacccctggaaaACACATGGAACATTAGAGAAAACATAAATTGTCCTGGAAAACAAGTTTCATTGGCAGAGAAAAGCATgagttttaaatgtttatgttctTTAAAGAGCAGTTTAAAGTTGGCACATTAACTTCCATTTTGATAATCACAGTTTTACCGTAAATACGGTTAAATTCTAGTTGGTGTTGCAAATCCATGGTTAATTTGTGGTTCCTATTGTCGCTGTAGTTAGACCATTGTTTTGGCACCTTGGATTGGAATAACATTTGCCTCAGTTTAGTCAAGTTCAATACTCTGTTTCTGCTGTTAATGTGAGTCAGCTCCCTCATGTGGACAACAGTTGATAGATGATGTTTGTGTGTCTAACGTAGCTCCTGATCCTGATGAGCCTCAGTCTGATTAAAAACACCTGCAGCAGCTAATCAAGATCTGCAGGACTCCAGTTCATCTACAGAGTATCTAAATGTCCAAATGATGCTGTTTATTGcttgaat

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:0031262 Ndc80 complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055391 True 766 lncRNA 0.37 2 10771874 10785654

Neighbor

gene id symbol gene type direction distance location
XLOC_028554 NA coding downstream 18933 10748977 ~ 10752941 (-)
XLOC_028553 BX897748.1 coding downstream 110197 10661561 ~ 10661677 (-)
XLOC_028552 tspan12 coding downstream 172812 10574822 ~ 10599062 (-)
XLOC_028551 NA coding downstream 423262 10346738 ~ 10348612 (-)
XLOC_028550 si:dkey-22l11.6 coding downstream 862503 9901116 ~ 9909371 (-)
XLOC_028557 si:ch211-161n3.5 coding upstream 140517 10926171 ~ 10931729 (-)
XLOC_028558 si:ch211-161n3.4 coding upstream 163735 10949389 ~ 10958074 (-)
XLOC_028559 si:ch211-161n3.3 coding upstream 173788 10959442 ~ 11024844 (-)
XLOC_028560 mettl25 coding upstream 249449 11035103 ~ 11053543 (-)
XLOC_028561 si:dkey-21h14.8 coding upstream 268655 11054309 ~ 11064073 (-)
XLOC_028540 BX901962.1 non-coding downstream 1119906 9649283 ~ 9651968 (-)
XLOC_028534 NA non-coding downstream 1249932 9514548 ~ 9521942 (-)
XLOC_028568 BX784029.1 non-coding upstream 338959 11124613 ~ 11132617 (-)
XLOC_028570 BX784029.2 non-coding upstream 393855 11179509 ~ 11186936 (-)
XLOC_028571 BX649349.2 non-coding upstream 459678 11245332 ~ 11248285 (-)
XLOC_028574 NA non-coding upstream 821104 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 non-coding upstream 822542 11608196 ~ 11608283 (-)

Expression


Co-expression Network