XLOC_028557 (si:ch211-161n3.5)


Basic Information

Item Value
gene id XLOC_028557
gene name si:ch211-161n3.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10926171 ~ 10931729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055401
ACAGGGGAAGTGAGATTAGTTGATGGTAACAGCCCCTGTGCTGGTCGAGTAGAGGTGTATCATAAAGGTCAGTGGGGAACAGTCTGTGATGATGGCTGGGACCTAAATGATGCTAAAGTGGTTTGTAAAGAACTGGGCTGTGATAAAGCATTACGTGCTGCTGGCCTTGCTCGCTTTGGACGGGGATCAGGACCAATCTGGATGGGTGCAGTTAATTGTACAGGATCAGAGTCAAGACTGAAGGATTGTAAATCAAGGAGGAGGGGTGTAAGTAACTGTAAACACGATGAAGATGCTGGAGTTGTCTGTTTGGGTAAGTTGGCTGACTCATAAATGGACCTCATCTGTGTGCTGGGAGATTAGAGATACAAAACATAAAGACGTGGATGTCAGTGTGTGATGTTGGCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGTTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGGTAAAGTAGAATCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAAATGAGTCTCACCTGGTTTTCTGTCCTGCGTTCAAGTCTTCACACTGTACCCTTGAAAATGCTGTAGGAGTAATATGCTCTGGTTACACTGATCTCCGACTGGTAAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATCTCAGAAAATGGGGCACAGTATgtgatgcatgctgggatatgagAGCTGCCAATGTCCTCTGTAAACAGCTGAATTGTGGGATTCCTGTGTCCGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCAGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTCATCTGCTCTAACTCGTCTTTGCCTCTTCATGAGGGTTTGGTGCGGTTGTCTGGAGAGAGTCAGTGTGAGGGGCAGGTGGAAGTTTTGATCCAGCAGGTCTGGAGGAAGGTTTTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGTGCTCAACTTCTCGGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGAGTGTGTGATGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCAATCACCTGCCTTGGCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAACGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTAGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACATATTTGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTCTACACGAGGAGGATGTAGGAGTCATCTGCTCTGAATTTACAGAGATCAGGTTAACTGACGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTTAAATCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAGGAGCTGAACTGTGGAAGATCTGGCAGTGAACCCAGTCATTCAGTGAGCCTGAGATCTGCTCCTAAATGGTTGGATCATCTTAAATGcagaaaacatgacaaaacattgTATCATTGTCCATCTTTACCCTGGGGTAAGAACCACTGCTATATAGATGAGGTGGCCAAAATCACTTGCTCTGAAAAAGAGACTGATGAGTCACCAAAGAGTCATCTGACATGTTCAGCATTTCCTCACCACAAACAGTGTTCAGcacatGTTCCTCTCAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATAATCTCTGGGACATCAGTGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTAAGGGCTGATGGGAATTCAACCTTTGGTGCTGGTAAAGGTGTTGTGTGGCTGAACGGAGTCCATTGCAGAGGGAATGAGCTTCACCTGTGGGACTGTCCTTTCTCCCTGAAGAAGCACAATGATTGCTCCCATGAAAAGCATGCTGGACTCACCTGTGCAGACTTGTCAGGTTTGTCAGTGTCCACTACTCTTTCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCCAGAAACTCTCCCAGTCCCCCCAGTTCTGGTGATTGTACTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTAAGAGGAGACACAAAACCACCACTGAGGCCGTTTATGAGGAGATTCAGCACAAACACTTCACTCAGGGGGaCAAACTGGACCAAGATGCTTCTAAAGAGTGCCTCAGTGATGTACACAAATATGTCATGAATCAGAGTTATGATGACGTCACAACCCTGCACGAAGAAGTGACACTGAAGAATTATGATGAAGTCTTCTCTTGTGAACAAAATGATGGAGCTGTGATCAGTGAGTCTGGGGGTGTTCCAGTCAGGAAATATTATGTTCACTTCCGGTAACCAATGTAgtaaaaaacatatgattgttcaTCTACTTACTTGTTATCATTTGCTTTTAGTTAAAGTAGTCACCAACCGTCTACACATTCTGAGAATATTTCAGAATTTACTGAGACTAATTTTGTTTATTACAGAGTTTAGGAAGGGAAGCCAGATGAAAAGAAGAATAATGAGTAAACTCCCTACAATAACTgtttgagctgtttttttttttacataatactaataatactaataataataataataataataataataataataattattattattattattattattattattattattattattatcattcattcattcatttattcattttcttttggctaaactgccaacttatccagcatatgttttatgcagcggattccctttcagctggaattattattattattattattattattattattattattatttattattattattattattagtggtagtagtagtagtataattataattataattataattattaatattgtataattttaatattaacatattttttcctgtaatttattattatttttattgtttagtgcTAAGGGTGTCTTGTTATTGTTTGCTAGATCTGAATTCTtgtcttatttttttgttaaaaacttATCTCACATTATTTTCATacacatttcatattttaaatcatttagcgCGGCAAAGAGATCTGTTTGTTCTACCTGTCTGTCATCACACATGCAGTAAAAGCTGGTACTGAATTGTTGTCCCTGTCCTTGGTGCTGAAGGGCTTTTCCACACGTTTATGTGGATTTGTCCTAATCATTCCTGCAATACTGAtgctattttaatatatatatagtgttagtATGAGAATTCCATGATGTTACTTAGAGCAAAAAAGGTTCTAAAATAAGTTCTGACCTATCTTATGTTGTCTTTTGGTTAATT

Function

symbol description
si:ch211-161n3.5 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055401 True 3710 mRNA 0.43 13 10926171 10931729

Neighbor

gene id symbol gene type direction distance location
XLOC_028555 NA coding downstream 90551 10766014 ~ 10835620 (-)
XLOC_028556 NA coding downstream 140517 10771874 ~ 10785654 (-)
XLOC_028554 NA coding downstream 173230 10748977 ~ 10752941 (-)
XLOC_028553 BX897748.1 coding downstream 264494 10661561 ~ 10661677 (-)
XLOC_028552 tspan12 coding downstream 327109 10574822 ~ 10599062 (-)
XLOC_028558 si:ch211-161n3.4 coding upstream 17660 10949389 ~ 10958074 (-)
XLOC_028559 si:ch211-161n3.3 coding upstream 27713 10959442 ~ 11024844 (-)
XLOC_028560 mettl25 coding upstream 103374 11035103 ~ 11053543 (-)
XLOC_028561 si:dkey-21h14.8 coding upstream 122580 11054309 ~ 11064073 (-)
XLOC_028562 si:dkey-21h14.15 coding upstream 135056 11066785 ~ 11067331 (-)
XLOC_028551 NA non-coding downstream 577559 10346738 ~ 10348612 (-)
XLOC_028568 BX784029.1 non-coding upstream 192884 11124613 ~ 11132617 (-)
XLOC_028570 BX784029.2 non-coding upstream 247780 11179509 ~ 11186936 (-)
XLOC_028571 BX649349.2 non-coding upstream 313603 11245332 ~ 11248285 (-)
XLOC_028574 NA non-coding upstream 675029 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 non-coding upstream 676467 11608196 ~ 11608283 (-)

Expression


Co-expression Network