XLOC_028558 (si:ch211-161n3.4)


Basic Information

Item Value
gene id XLOC_028558
gene name si:ch211-161n3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10949389 ~ 10958074 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055402
CGCTGAGGTTGTTTGATGATTTCCTCTGTTGTGTCTAATAAGGTAATGATGAACGTGATTGGAAAGATTTACAACTCTTGTCTTTAAGGGGCTTGTAAGGAAGAAACTTGTGCTGCATTTGAGCTGATGATATGGTGGCGTGTGTCATGGAGAAGGAGATCATGAAGAGTTTGATGCTTATGCTTCTGGAAATCATCACCGCTGTTTGTCATTTATATGTTGCACAAAAAGATCATCTGAATGTGAGACTTGTAAATGGGAACAGTCGCTGTGCCGGTCGAGTGGAAGTTCTTCATAGAGGTCAGTGGGGAACAGTGTGTGATGATTGGTGGGATTTGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGAGAACCTGTAGATGCTCTGGGTTATGCTCATTTTGGACAAGGATCGGGACCAATCTGGATGAGTTATGCAGTGTGTACTGGATCAGAGTCAACACTGAAGAGCTGTGGCTCCACAGGATGGGCTAAAAACAACTGTGATCATAATAACGATGCTGGAGTCATATGCTCAGAGGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATTCTTCATGATCAGACGTGGATGTCAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCAATGTAGAGGAAATGAGTCTCAGATTCACCTCTGTCCAACATCACCGTTATATAAAATCAATTGTTCTCATCACAACTATACTGAACTTATGTGTGCAGAAAGTGTGAATGTAAGACTTGTAAATGGTACCAGTCGCTGTGCTGGTCGAGTGGAAGTTCTTCATAGAGGTCAGTGGGGAACAGTGTGTGAAGATGACTGGGATATGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCATTTTGGACCAGGATCAGAGCCAGTCTGGATGAGTTATGTTGTGTGCACTGGATCAGAGTCTACTTTGAAGAACTGTGGATTAACAGGATGGGGTACAAGCGCATGTAAACAAAATGGTGAAGCTGGAGTCATCTGCTCAGAAGTGAAACTCTTTGGAGATTCTCACTGCTCTGGGAGGCTGGAGATTCTTCATAATCAGACGTGGATGTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAATTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGATGAGTCTCAGATTCACCTCTGTCCATTtacatcaacatcatcatcacaTGAAAACAACTGCACTCATGACAACACAGAACTTGTTTGTGCAGAAAGTGTAAATGTGAGACTTATAAATAGTACCAGTCGCTGTGCTGGTCGAGTGGAAGTTTTTCATAGAGGTCAGTGGGGAACGGTGTGTGATGCTGCCTGGGATCTTAAAGATGCTGCAGTGGTGTGTAGAGAACTGGGATGTGGAGAACCTGTAGATGCTCTGAGTGGTGCTCATTTTGGACAAGGAACAGGACCAATCTGGATGGGTGTTGTGTTATGCACTGGATCAGAGTCTACCCTGAAGGCCTGTGGGTCATGGGGATGGGAGAAACATAACTGTGATCATAGTGGTGATGCTGGAATCATCTGCTCAGAGGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATTCTTCATAATCAGACGTGGATGTCAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGACGAGTCTCAGATTCACCTCTGTCCAACATCAACATTATATGAAAACAACTGTACTCACAACAACAGTGTTAGACTGATTTGTGCGGatgCAAGGAATGTGAGGTTGGTTGATGGTAACAGTCGCTGTGCTGGTAGAGTGGAGGTTTATCATAGAGGTCAGTGGGGAACAGTGTGTGAAGATGACTGGGATTTGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCACTTTGGACCAGGATCAGGACCAATCTGGATGAGTACTTTAAGTTGTTATGGGATGGAATCTACATTAAAAAGCTGTGGAGCGGCAGGATGGGGCCAACACACCTGTGGTCATAATGATGATGCTGGAGTCATCTGCTCAGATCATAAACAGTCCAGACTTATTGACGGATCTCATCTGTGCTCTGGGAGGTTAGAGATCCTTCATGATCAGACGTGGATGTCAGTGTGTGATGCTGCATTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGCTCAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGATGAGACTCGCATTTCATTCTGTTTAATGTCACAATCACACAAAAACAATTGCACAAATGCCAGTAGAGTAAGCCTGATATGTTCAGGTTACACGGATTTTCGACTGGTCAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATTTCAGTAAATGGGGCACAGTGTgtgatgcatgctgggatatgagAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGACGAGATGTTGGAGTCATCTGCTCTAACTCGTCTCTGGCTCTTCATGAGGGTCTGGTGCGGTTGTCTGGAGGGAGACAGTGTGAGGGGCAGGTGGAAGTTTTGATCCAGCAGGTCTGGAGGAAGGTTCTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGTGCTCAACTTCTCCGGCTCCTCTTCATCCAGTTCTGAACACAGTCATGAGTGTGTGATGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCAATCACCTGCCTTGGCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTCGACACAAGGAGGATGTAGGAGTCGTCTGCTCTGCGTTTAAAGAGATCAGGTTAACTGAAGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGAAATAGACACAGTGAGTATTATTTGTCAAGAGCTGAACTGTGGAAGATCTGGTGTTTTGTCTGTTTCTACATCAAGACTGAAATCAGCTCCTAACTGGCTGGACAAAGTAACATGTCGATCACATGATTCACATCTTTTGCAATGTCCGTCTTCAATTTGGGGACAAAATGACTGTAATACAGATGAAGTGGCCAAAGTTACCTGCTCAGAAAAGGAGAGTCCTGCATCCCCCAGAAGTTATCTTACTATTTCCACATCTCCTCACCAAAGACAATGTTTTGatgtgtgtgttttagctcacGTTCCTCTCAGACTGCGTGGAGGGCACAACCAGTGCTCTGGGAGGCTGGAAGTATATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACTTCAGTGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCTCACAAAGAGCACGCTGGACTCACCTGTGCagatTTGTCAGTGTCCACTACTCCTGCCACATCAGCATCACCTTCTGGTCCAATGTCTCAGACAGTGAGCTCAACATCAGTCTCTTGTTCACAAACACGTCCAGAAACACTCGCAGTTCCCCCAGTGCTTGTGATTGTACTGGGAGTTGTGCTCGTACTGCTCTTAGTAGCATTGCTTATACTGATTCAGCAGAACAGACTCATGAGGAAAGCTCTTGCTGACTGGTACACTGGACTACACAGGGCTCCAACGGAGGCAGTTTATGAGGAAATCTACCAAAGACACAATGACTTGAGAGagagtttTATTTCTCAAGAACAGCGTTCTGGGTTTGGAGATGGAGATGCACTTCTACCAGATCGGATCAATGCAGGCATGTCAGACTATGAGGACATCGCCATTAATGTACCAATACCAGATGAGACAGGTCATTGTCCAGTTCTCTATTAT

Function

symbol description
si:ch211-161n3.4 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000045752

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055402 True 4832 mRNA 0.48 19 10949389 10958074

Neighbor

gene id symbol gene type direction distance location
XLOC_028557 si:ch211-161n3.5 coding downstream 17660 10926171 ~ 10931729 (-)
XLOC_028555 NA coding downstream 113769 10766014 ~ 10835620 (-)
XLOC_028556 NA coding downstream 163735 10771874 ~ 10785654 (-)
XLOC_028554 NA coding downstream 196448 10748977 ~ 10752941 (-)
XLOC_028553 BX897748.1 coding downstream 287712 10661561 ~ 10661677 (-)
XLOC_028559 si:ch211-161n3.3 coding upstream 1368 10959442 ~ 11024844 (-)
XLOC_028560 mettl25 coding upstream 77029 11035103 ~ 11053543 (-)
XLOC_028561 si:dkey-21h14.8 coding upstream 96235 11054309 ~ 11064073 (-)
XLOC_028562 si:dkey-21h14.15 coding upstream 108711 11066785 ~ 11067331 (-)
XLOC_028563 si:dkey-21h14.12 coding upstream 112790 11070864 ~ 11077872 (-)
XLOC_028551 NA non-coding downstream 600777 10346738 ~ 10348612 (-)
XLOC_028568 BX784029.1 non-coding upstream 166539 11124613 ~ 11132617 (-)
XLOC_028570 BX784029.2 non-coding upstream 221435 11179509 ~ 11186936 (-)
XLOC_028571 BX649349.2 non-coding upstream 287258 11245332 ~ 11248285 (-)
XLOC_028574 NA non-coding upstream 648684 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 non-coding upstream 650122 11608196 ~ 11608283 (-)

Expression


Co-expression Network