G939238


Basic Information

Item Value
gene id G939238
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7439921 ~ 7440202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071235
gtgtatgacagcgtgttccagttcccgccaatatccagcaactttgtacggccattgaagaggagtgggacaacattccacaggacacaatcaacagcctgatcaactctatgagaaggagatgttgtgctgcatgaggcaaacagTGGTCACACCACATTTCTGATTCACGTCCCTGTGACCAGTAGATgcttatctgtattcccagtcatgtgaaatgcatagattagggcctaatgaattcatttcaattgactgatttcattatatgaactgtaacac

Function

NR:

description
Transposable element Tcb1 transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071235 True 282 lncRNA 0.44 1 7439921 7440202

Neighbor

gene id symbol gene type direction distance location
LOC110535202 LOC106579690 coding upstream 12658 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 388517 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 764599 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 959429 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 1086570 6346007 ~ 6353351 (+)
LOC110535203 LOC106579691 coding downstream 7212 7447414 ~ 7502456 (+)
LOC110536543 LOC106579684 coding downstream 522807 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 529725 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 731670 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 734591 8174793 ~ 8175785 (+)
G939235 NA non-coding upstream 3035 7436687 ~ 7436886 (+)
G939179 NA non-coding upstream 112816 7325479 ~ 7327105 (+)
G939177 NA non-coding upstream 114730 7324345 ~ 7325191 (+)
G939134 NA non-coding upstream 152662 7286390 ~ 7287259 (+)
G939063 NA non-coding upstream 228165 7211484 ~ 7211756 (+)
G939384 NA non-coding downstream 110481 7550683 ~ 7550929 (+)
G939387 NA non-coding downstream 111782 7551984 ~ 7552248 (+)
G939449 NA non-coding downstream 211146 7651348 ~ 7651557 (+)
G939451 LOC106579675 non-coding downstream 213188 7653390 ~ 7653627 (+)
G939452 NA non-coding downstream 213835 7654037 ~ 7654408 (+)
G938723 NA other upstream 418497 7019151 ~ 7021424 (+)
G937889 NA other upstream 1317652 6121584 ~ 6122269 (+)
G937237 NA other upstream 1934592 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2295356 5143317 ~ 5144565 (+)
G937051 NA other upstream 2411776 5019905 ~ 5028145 (+)
G939408 NA other downstream 134150 7574352 ~ 7574909 (+)
G939544 NA other downstream 380318 7820520 ~ 7823317 (+)
G939690 NA other downstream 700064 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 756166 8195607 ~ 8379328 (+)
G940102 NA other downstream 934304 8374506 ~ 8377928 (+)

Expression


Co-expression Network