G939451 (LOC106579675)


Basic Information

Item Value
gene id G939451
gene name LOC106579675
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7653390 ~ 7653627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071475
GGAAGACGCTGAGGTTGGGGTTCTTGTTGCACCAGTCGGAGGCGCAGCACATTGGGTAGATGCCTGTGTCGTCCTTGGTGGAGGGCGCGCAGATGAAGGGGCGGTCGCGGGGGATCAGTTCGCTCTCGTGCACGCACATGCTGCGCTCGGTGGTGAGCCGGCTGCCAGACTTCATGACCGTCACGAAGCACAGACCGTCCGTGGTGCACGTAGAGTTGAGACAGCGCTGGCAATAGCA

Function

NR:

description
TGF-beta receptor type-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071475 True 238 lncRNA 0.62 1 7653390 7653627

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 150934 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 226127 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 601986 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 978068 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1172898 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 309382 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 316300 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 518245 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 521166 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 541980 8195607 ~ 8379328 (+)
G939449 NA non-coding upstream 1833 7651348 ~ 7651557 (+)
G939387 NA non-coding upstream 101142 7551984 ~ 7552248 (+)
G939384 NA non-coding upstream 102461 7550683 ~ 7550929 (+)
G939238 NA non-coding upstream 213188 7439921 ~ 7440202 (+)
G939235 NA non-coding upstream 216504 7436687 ~ 7436886 (+)
G939452 NA non-coding downstream 410 7654037 ~ 7654408 (+)
G939453 NA non-coding downstream 2591 7656218 ~ 7656420 (+)
G939454 NA non-coding downstream 3350 7656977 ~ 7657179 (+)
G939457 NA non-coding downstream 7688 7661315 ~ 7661542 (+)
G939459 NA non-coding downstream 13057 7666684 ~ 7666950 (+)
G939408 NA other upstream 78481 7574352 ~ 7574909 (+)
G938723 NA other upstream 631966 7019151 ~ 7021424 (+)
G937889 NA other upstream 1531121 6121584 ~ 6122269 (+)
G937237 NA other upstream 2148061 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2508825 5143317 ~ 5144565 (+)
G939544 NA other downstream 166893 7820520 ~ 7823317 (+)
G939690 NA other downstream 486639 8140266 ~ 8140583 (+)
G940102 NA other downstream 720879 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 726220 8379847 ~ 8497020 (+)

Expression


Co-expression Network