G939459


Basic Information

Item Value
gene id G939459
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7666684 ~ 7666950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071483
CGTCATGATGGTGAGTTggcgttgctcttatatccagtagttcctcccgactgtatgtaataaaacctaagattacctggggtaccaatgcaAGAAATAACacgaaaaaagaaaaaaaaaaatactgcatagtttcctaggaacacaaagcgaggcggccatctttGTCGGCGCCGCAAGTAGACCATAAAATAGTGTAGTGCAATCAGATCATATGCCCGAACTGTGCGACGTAGTAGGGAGTTAGAACATAGGCCTGTTGGAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071483 True 267 lncRNA 0.43 1 7666684 7666950

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 164228 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 239421 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 615280 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 991362 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1186192 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 296059 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 302977 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 504922 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 507843 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 528657 8195607 ~ 8379328 (+)
G939457 NA non-coding upstream 5142 7661315 ~ 7661542 (+)
G939454 NA non-coding upstream 9505 7656977 ~ 7657179 (+)
G939453 NA non-coding upstream 10264 7656218 ~ 7656420 (+)
G939452 NA non-coding upstream 12276 7654037 ~ 7654408 (+)
G939451 LOC106579675 non-coding upstream 13057 7653390 ~ 7653627 (+)
G939463 NA non-coding downstream 6179 7673129 ~ 7673333 (+)
G939464 NA non-coding downstream 6508 7673458 ~ 7673695 (+)
G939472 NA non-coding downstream 16682 7683632 ~ 7683850 (+)
G939476 NA non-coding downstream 21303 7688253 ~ 7688552 (+)
G939477 NA non-coding downstream 21871 7688821 ~ 7689108 (+)
G939408 NA other upstream 91775 7574352 ~ 7574909 (+)
G938723 NA other upstream 645260 7019151 ~ 7021424 (+)
G937889 NA other upstream 1544415 6121584 ~ 6122269 (+)
G937237 NA other upstream 2161355 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2522119 5143317 ~ 5144565 (+)
G939544 NA other downstream 153570 7820520 ~ 7823317 (+)
G939690 NA other downstream 473316 8140266 ~ 8140583 (+)
G940102 NA other downstream 707556 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 712897 8379847 ~ 8497020 (+)

Expression


Co-expression Network