G939477


Basic Information

Item Value
gene id G939477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7688821 ~ 7689108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071501
CGAGAAATGAACGATTAAAGaccaataaacaaaacaaacacaaacacatgtgaGGGATACAAACTAAAGTCTTTGCTCAACTGAGAAATAACAAGTTACTAGTTAAAAAAAGTCAGTCAAAGCTCGAAAACATCATGTTTACAAATGACTTCGCGCATTGATCCTGGACTAAAGACGATCCCCTCAACAATAAACATCGGCTCTGACAGCGCCGCTTTGCTCCGAGTCTGACCTGCGCCATCTTTGAGAAGTCTTTTTAGGCTGCCGCTTCTTGAAAACAAAGAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071501 True 288 lncRNA 0.41 1 7688821 7689108

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 186365 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 261558 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 637417 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1013499 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1208329 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 273901 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 280819 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 482764 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 485685 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 506499 8195607 ~ 8379328 (+)
G939476 NA non-coding upstream 269 7688253 ~ 7688552 (+)
G939472 NA non-coding upstream 4971 7683632 ~ 7683850 (+)
G939464 NA non-coding upstream 15126 7673458 ~ 7673695 (+)
G939463 NA non-coding upstream 15488 7673129 ~ 7673333 (+)
G939459 NA non-coding upstream 21871 7666684 ~ 7666950 (+)
G939478 NA non-coding downstream 743 7689851 ~ 7690206 (+)
G939479 NA non-coding downstream 1393 7690501 ~ 7691830 (+)
G939487 NA non-coding downstream 15776 7704884 ~ 7706739 (+)
G939493 NA non-coding downstream 30199 7719307 ~ 7720088 (+)
G939510 NA non-coding downstream 67841 7756949 ~ 7759263 (+)
G939408 NA other upstream 113912 7574352 ~ 7574909 (+)
G938723 NA other upstream 667397 7019151 ~ 7021424 (+)
G937889 NA other upstream 1566552 6121584 ~ 6122269 (+)
G937237 NA other upstream 2183492 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2544256 5143317 ~ 5144565 (+)
G939544 NA other downstream 131412 7820520 ~ 7823317 (+)
G939690 NA other downstream 451158 8140266 ~ 8140583 (+)
G940102 NA other downstream 685398 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 690739 8379847 ~ 8497020 (+)

Expression


Co-expression Network