G939487


Basic Information

Item Value
gene id G939487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7704884 ~ 7706739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071512
TTTTTATTCCATAAAATATGCATTCTGTTgacattttacacacacacacattgcaaagTACTGGCATCTCCGCCCCGAGAAAATGGCTGCAATAGAGTGATGATTAAAGTATTGCGTAAGTGTCTACATCTCTACTCTTTCTAAACGTTGGCAATATGAACACATTTGATATCacaaaaaataacaaacaaacaaaaactctTAAGAGACAAACAGGTTTAATACTACAAAGACccttggagaaaaaaaaatgacGTGCTGCTTCAAAGCTGCCTCGATAATACTGTAGAACGACGGAGACAACACTTCCTGTTGCGTAGGCATAgaaacatcatcaaatcaaacgGACAGGACAAATACAATACATTctggataaaaaataaattgtcATCATGCAAGAATAtaacatcaaataaaataaaaaagaggcACATAGTGAATCACGTTTCAATCCATGTCTTATGCATATCAAATATAGAATATTTTCAGAATAATTATTATCAACATTACAGAGTTATTGGATTTGCTTTCTATAGGAACTATATACAAGGCATATTGTCCCACGTTTGTTTTACCCCACTGCTGGGTAAAGTGATGATTGtcattttcattaaaaacatggCTGTTGTTCCTGTTATTTTATTAAATATATCTTATCTACTCTAAAGGAATAACGGGAATCCCTTTTTGTGTCTTTTCAGCTTATAGAGTGGGGGGGATGCTTGTCTTCCAGCTGTTTGACGTTCAGAATGTCTCAGTCTGCAACTTCCAACTCCTTCTCTATTTACAATAGTACAAATGCAAAAcctggatagaggagaggagaggagagggagaggggaggagaggggaggagagggagaggggaggagagggagaggggagggagaggggaggagagggagaggggaggagaaggagaggggaggagaggggaggagaagtgaggaagaggagaagtgGGCGAGGGAAAAGCtaaggaggacacacacacacaaacacacacacacacacacacacacacacacacacacacacacccctccacagcgttagaggaggagagagctacTGGATACAAAACACTGTGTAATAAAAAATGAATCCTCCCTGTCACGATATATAGAGAGTTCTATGGAACCAAAGCTGGAATGTGATTGTGTCTCCCCTGTCATTGGAACAAGATGAATCTCATAGCTTCTCGTCTATGATTGACACTTGTGCAGTAGAGTTTATAGGGTTGATGGTCAAGGCTTTTACAGGATGATGCTTCCTGCCATGCAATGACCTGGGAGAGGGTCCCTTAGAATAGTCCACAATACACCAGGCCTCGTGCCACCAGGGCGTGGCTGGCTACTGGGGACTAGCTAGGCCTCGGCTATGCCTGGGGCTAGAATGAGGACGAGGCCCAAGGCGAGGCAgaggaagatgggcagggaggAGGCCGAGGAGCTGGGGTATCCCGTGGACCTGATGGTGGAGATGGAGACGTCGGAGGTGAGGAAAGCAGACAGAGGCACGTGGGAGACCAGGGTGGGGCTGCCGTAGTTGATGAGTGAGTCGATCTTCTCCGCCTCCATGCTGCAGGCTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071512 True 1593 lncRNA 0.45 2 7704884 7706739

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 202428 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 277621 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 653480 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1029562 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1224392 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 256270 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 263188 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 465133 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 468054 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 488868 8195607 ~ 8379328 (+)
G939479 NA non-coding upstream 13054 7690501 ~ 7691830 (+)
G939478 NA non-coding upstream 14678 7689851 ~ 7690206 (+)
G939477 NA non-coding upstream 15776 7688821 ~ 7689108 (+)
G939476 NA non-coding upstream 16332 7688253 ~ 7688552 (+)
G939472 NA non-coding upstream 21034 7683632 ~ 7683850 (+)
G939493 NA non-coding downstream 12568 7719307 ~ 7720088 (+)
G939510 NA non-coding downstream 50210 7756949 ~ 7759263 (+)
G939518 NA non-coding downstream 68176 7774915 ~ 7790418 (+)
G939535 NA non-coding downstream 101709 7808448 ~ 7810033 (+)
G939542 NA non-coding downstream 109050 7815789 ~ 7818889 (+)
G939408 NA other upstream 129975 7574352 ~ 7574909 (+)
G938723 NA other upstream 683460 7019151 ~ 7021424 (+)
G937889 NA other upstream 1582615 6121584 ~ 6122269 (+)
G937237 NA other upstream 2199555 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2560319 5143317 ~ 5144565 (+)
G939544 NA other downstream 113781 7820520 ~ 7823317 (+)
G939690 NA other downstream 433527 8140266 ~ 8140583 (+)
G940102 NA other downstream 667767 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 673108 8379847 ~ 8497020 (+)

Expression


Co-expression Network