G939535


Basic Information

Item Value
gene id G939535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7808448 ~ 7810033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071573
GTAAGGTATGCTAGAGTAAGGTATGCTACAGTAAGGTATGCTAGAGAAAGGTATGCTACAGTAAGGTATGCTTCAGTAAGTTATGCTAGGGAAAGGTATACTACAGTAAGGTATGCTACAGTAAGGTTTGCATCAGTAAGGTATGCTACAGTAAGGTATGCTACAGTAAGGTATGCTACAGTGAGGAATGCTACAGTAAGGAATGCTAGAGAAAGGTATGCTACAGTAAGGAATGCTAGAGTAAGGTATGTTACAGTAAGGTATGCTTCAGTAAGTTATGCTAGGGAAAGGTATACTACAGTAAGGTATGCAACAGTAAGGTATGCTACAGTAAGGTATACTACAGTAAGGTTTGCAACAGTAAGGTATGCTACAGTAAGGTATGCAACAGTAAGGTCTGCAACAGTAAGGTATGCTACAGTAAGGTATGCTAGAGAAGGTATGCTAGAGAAAGATATACTACAGTATGGTATGCTACAGTAAGGTATGCTTAAGAAAGGTATGCTACAGTAAGGTATGCTACAGTAAGGTATGCTACAGTAAGGTTTGCAACAGTAAGGTTTGCAACAGTAAGGTATGCTACAGTAAGGTATGCTAGAGAAGGTATGCTAGAGAAAGATATACTACAGTATGGTATGCTACAGTAAGGTATGCTTAAGAAAGGTATGCTACAGAAAGGTATGCTAGAGTAAGGAATGCTACAGAAAGGAATGCTACAGTATGGTATGCTAGAGAAGGTATGATAGAGTAAGGTATGCTAGAGAAGGTATGCTAGAGTAAGGAATGCTACAGAAAGGAATGCTACAGAAAGGTATGCTAGAGTAAGGAATGCTACAGTAAGGaatgctacagtactgtatgctAGAGTAAGGTATGCTACGGTAAGGTATGCTACAATATGGTATGCTACAGTATGGTATGCTACAGTATGGTataccatggccttttttttgcctttacctcccttgtctcacctcatttgctcacatcgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgaa

Function

NR:

description
PREDICTED: keratin-associated protein 5-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071573 True 1153 lncRNA 0.39 3 7808448 7810033

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 305992 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 381185 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 757044 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1133126 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1327956 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 152976 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 159894 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 361839 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 364760 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 385574 8195607 ~ 8379328 (+)
G939518 NA non-coding upstream 18030 7774915 ~ 7790418 (+)
G939510 NA non-coding upstream 49185 7756949 ~ 7759263 (+)
G939493 NA non-coding upstream 88360 7719307 ~ 7720088 (+)
G939487 NA non-coding upstream 101709 7704884 ~ 7706739 (+)
G939479 NA non-coding upstream 116618 7690501 ~ 7691830 (+)
G939542 NA non-coding downstream 5756 7815789 ~ 7818889 (+)
G939580 NA non-coding downstream 103938 7913971 ~ 7914317 (+)
G939607 NA non-coding downstream 164235 7974268 ~ 7974559 (+)
G939608 NA non-coding downstream 165706 7975739 ~ 7979846 (+)
G939619 NA non-coding downstream 182128 7992161 ~ 7992439 (+)
G939408 NA other upstream 233539 7574352 ~ 7574909 (+)
G938723 NA other upstream 787024 7019151 ~ 7021424 (+)
G937889 NA other upstream 1686179 6121584 ~ 6122269 (+)
G937237 NA other upstream 2303119 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2663883 5143317 ~ 5144565 (+)
G939544 NA other downstream 10487 7820520 ~ 7823317 (+)
G939690 NA other downstream 330233 8140266 ~ 8140583 (+)
G940102 NA other downstream 564473 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 569814 8379847 ~ 8497020 (+)

Expression


Co-expression Network