G939542


Basic Information

Item Value
gene id G939542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7815789 ~ 7818889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071582
attttaattaaaaaataaaaaataaaaatattgaaaACGCACAATTTTGTCAGGCAACAgtaactaaacagaaaacaagatcccacaacctaatggtggggaaaaaagggctgcctaagtatgatccccaatcagagacaacgatagaaagctgcctctgattgggaaccacactcggccaagaacaaagaaacagaaaacatagaatttcccacccgagtcacaccgagacctaaccaaacatagagaataataaggatttctaaggtcagggcgtgacagtaatacattttagaataagtctgtaaagtaacaacatttggaaaaagttaaggggtctgaatatatacacacaagctcacagaacgggaccgctcaGTGCTGAAACACGTAAAAACCGTCTgtcctcactaccgagttccaaattgcctctggaagcaacgtcagcacaataactgtttgtcgggagcttcatgaaactgttttccatggccgagcagatgcacacaagcctaagaacaccatgcgcaatgccaagcgtcggctggagtggtgtaaagctcgccgccattagactctggagtAGTGATCAAttactcttcaccatctggcagtccgacggacaaatctgggtttcgAAGATGCCAGGAGATCGCtacttgccccaatgcatagtgccaactgtaaagtttgctgtttttcatggttcgggctaggcccagTGAAAATTTTAATTTACCCctgtttctccccaatttcgtggtatccaattgttagtaattactatcttgtctcatcgctacaactcccgtacgggctagGGAGAGACGAAGGCCGAAAGCCATGCgttctccgaaacacaacccaaccaagccgcactgcttcttaacacagcgcgcatccaaaccggaagccagccgcaccaatgtgtcggaagaaacaccgtgcactttggttagcgcgcactgcgcccggcacgccacaggagccgctggtgcgcgatgagacaaggatatccctacgggctaaaccctccctaacccggacaattgtgggttgccccacggacctcccggtcgcggccggctgcgacagagcctgggcacgaacccagagtctctggtggcacagctagcgctgcgatgcagtgccctagaccactgcgccacccgggaggccgaagGGAAATgttttaacgctacagcatacaattacattctagaggattctgtgattccaactttgtggcaacagtttggggaacgccctttcctgtttcagcatgacaatgcccccatgcacaaagcgaggtccattccAAAATGGTTGGTTGaggttggtgtggaagaacttggctggcctgcacagagccctgactttaatcgctcaacatcagttcCTGACCTCTCTAacgttcttgtggctgaatggaagcaagtccccgctgcAATGaatcaacatctagtggaaagccttcccagaagagtagaggctgttctCGTaacaaaggggagaccaactccatgttaatgccaatgattttggaatgagatattcgacgaacaggtgtccacatacttttgcaatTGTTATGGATTACAATTGGATAACTGTTACAGTGCCATTTTGGTTGTTAAATGGCTCTGTTACAACAATTTCttgctttctgtttttttttaaatatatataaatgatatatatatatataaatgaaaaagtgtacttgtttgacattttactgcattattaggagctagtaacataagcattttgctgaACCCGTTATGGCATCAGCGAAACTTTGTTCGCgaccaataaagtttgatttgattttgatctaCTACACACGGCTGATTGGTTGATGATCTGTATTGGTCTGTCTTGTCCTTTAACCACAGTACAGACTCGACGTAACAGGACCAGATTTCAAAACAGATTATATCAGACTCAGATTATTAAGAAAATGAAAAACATTTTTAATCAATAAGCACCAATGATTGTATAAAATATACTCACTTATAATTGATCAAATCTCTTATGAATTTCATAAATTATAACTTTTTTTGTGGTGAATTGCTATGTGATTGGTGGAAATATATGTTGAATGAAGTCACATCTAACTAGCCACCTATCAAATCAAAATTCTAGCGCCATAAAAGGAATGCTGTACAACGAAATTACAAAAAACTAAAACAGTCCCTGACAAACTATAAATTACATACTTAACCTTTTAATAATTTGATTCATTCACGTTATGTGAAGTCACCGTATAAATAAGATGTTGAATTGAAATGAAATACTGAGAGAAATTGTTGCTCAAATGAGAAATCACTGGACGTAGAAACACATCTAATATAGTAGTACATCAGCATTTCTTTCCTGAACACCTTTGTAGAATATGGGTGTTATGCGTGTGAAATAtactattggccctggtctaatggAACAAACATTTCTTAAAGAATGACCTAATAGGACAAACGATAAACATGGCCAATCACTGGAAGACGAAAGGTGACATCTTGAGTAGGATAAAAAACATCTGTAGTGAGAAATAATCTCCGCAAAGCCATGATTTGGAGCTGGTATCGACAGACAAGTATCCGCCATCTCATctcagtcagtcaaccaaccaatcagaggatgggagaggaggaaaatGTTGATGACAATGATGAAAAGtacaatcaaccaaccaatcagaggatgggagaggaggaataTGTTCATGACATGTTCATAAAGGAATGTACATATATTTGACACCTTTCCAGAGTGATAAGATGAGAGCAGATGAGTGGTGGAGGAGGACGGAGCGGTCTGTTAAACATGCTCTCTTGTCTCGATGCAAAGGACCACGAACTGGTTGCTACAGCTTTGTGCTTGCTGTCCCAGGAGGAAGCCTGAAGCTAGATTGGACGACTGGCCCATGACGGACATGTTGTCAGACTGCCACGAATCGCAGGACCGGTCTTCCAACAGGTTGCCAAACGTATTAGAGCCATGCCAGATGCTCTTCTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071582 True 3022 lncRNA 0.43 3 7815789 7818889

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 313333 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 388526 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 764385 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1140467 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1335297 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 144120 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 151038 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 352983 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 355904 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 376718 8195607 ~ 8379328 (+)
G939535 NA non-coding upstream 5756 7808448 ~ 7810033 (+)
G939518 NA non-coding upstream 25371 7774915 ~ 7790418 (+)
G939510 NA non-coding upstream 56526 7756949 ~ 7759263 (+)
G939493 NA non-coding upstream 95701 7719307 ~ 7720088 (+)
G939487 NA non-coding upstream 109050 7704884 ~ 7706739 (+)
G939580 NA non-coding downstream 95082 7913971 ~ 7914317 (+)
G939607 NA non-coding downstream 155379 7974268 ~ 7974559 (+)
G939608 NA non-coding downstream 156850 7975739 ~ 7979846 (+)
G939619 NA non-coding downstream 173272 7992161 ~ 7992439 (+)
G939630 NA non-coding downstream 191595 8010484 ~ 8010832 (+)
G939408 NA other upstream 240880 7574352 ~ 7574909 (+)
G938723 NA other upstream 794365 7019151 ~ 7021424 (+)
G937889 NA other upstream 1693520 6121584 ~ 6122269 (+)
G937237 NA other upstream 2310460 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2671224 5143317 ~ 5144565 (+)
G939544 NA other downstream 1631 7820520 ~ 7823317 (+)
G939690 NA other downstream 321377 8140266 ~ 8140583 (+)
G940102 NA other downstream 555617 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 560958 8379847 ~ 8497020 (+)

Expression


Co-expression Network