G939544


Basic Information

Item Value
gene id G939544
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7820520 ~ 7823317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1071586
gGTCTGCCATTACGTCCCGTCCGTCGAAGGAGTAGATCGGGATGTTTGATGGGAATTTGCCTCCACCCCCAGTGAAGATAGACTTGTAGTTACTGAACAAAATGTCCCCCTGTGGATACAGAACGAGTTGAGTTGACTGACACTTCATGTTGTTTCAACGTGGCGGTATACACTGACCTTAGATGATCTTAAGATGAGAGAGGTTGGCTTACCCTGAGGTTGGTTATGGGGTAGCTCTGTCTGAACCTCTGGGGGACCAGGTCTTTATTGATGGTGTGGATTTTTGAGGATACGAAGCCTCGGTAGTTGGCAGGCAGACCCATGGCCATGGCCTGGTCATAGCACCGCTTGTCTATCATGTCGTCGCCACCGAAGTTCCCTGTGTGGGGTTGGTTCAGGGCCACCAGGTTGAGCTGAGGAAGAGACCGAGGATTAGAGATGCTTGTCTGTCATGTCGTCGCCACCAAAGTTCCCTGTGTGGGGTTGGTTCAGGGCCACCAGGTTGAGCTGAGGAAGAGACCGAGGATTAGAGATGCTCCATTTGGTGTGTATTCTAAACCGCCACCTCGTTCAGAGTGATCCTTCCGCTACTCCAGGTGGTCAAGGTAACCAAACAAAAACGTCATAACTGACGTgtggcgacaggtagcctagcgattaaAGTCAATGTTAtgcttgatctgaaaatgtggtcAGAGGCGTCGTATGGATGATGTCACGCAATTTCGGAGCCTTTGGAGGCTTGCAGAGTCCAAATTGAGACCGCATCGCCGGGCGCCTctcaaatgttgtaacaatgctGAGGGCttcgcattgacatgattggttgacggtaggtgagaGCTGGAGGTCCTGTAttaacacaaactcacttccttgacaacgtCCTTCACAatcgctctgctctgctccacgtAGCACAAGAAGTATGAAGgtcctgacttctgcagaggccctATGACGGTAAAATGCTGCACGGCCAATGCAGACGTcagattgaccatgcagagccttttgttaagagcgttgggccagtaaccgaacggTCTCTGGTTCGAATTCCTgagcagactaggtgaaaaaCCTCCTGacgtacccttgagcaaggcacttctcaacaataacaacaataacaaattactaaaatgttaaaaataataataatgtgcacattcacaaacacacacaaatgttaAGTCATCAACAGTATCATTCTCATCTCTCTTAGGTGATGGTCTTGGTACAGAATGGACCGTCTGCTACTGTGAAATGGGAATCTAAATCTCTAAAACTCGAACCTGGGCAGTCCTTCAACGACAGCACACAGATAGTAATTTAATCCAAAAGTAGAATACTCAAACCACTGCTAAATCACATTTAGACTCCAGTTCATTTTGTGGCCAGGCTTGAGCCAAACCAATGACTTGTTTTCACGAACAATAACAAAAGGTTGAACTTTTTCCCCTCAGTTTTTCTCCTTTTTGGTATCTAGAAGTTTTCTAACTACTAACTAGGGAGCAGAAAGTTTACATAATGTATTTTTGATTGACTGTTTCTTGGCTCCAGTGCAAAGTTTCATAAAACAACCCCGGGTGTTACAAAAGTTAAAGGAAAGATGTGAGTAAGAATACAGAAGTGTAAATAAAGACTGTTTTAAAAAACTTTATTGTTCCTCTATGGAATAACAACAGCTAACTTTGCACAGGTGCAAACGCTTAGCCAATCAAACGCTTAGCCAatcttgtcatttttttgtcaacaaacTTACCCCGTATCTTCTGGCGGTGCCTGGCTGAGCCTAAGGAGGCAAACGTTTGTTACTAACTGGATTACAATCAGCAATCACACATCATATTCTGCTATAAGCATCCCTTATATGGAGGTCTACGATGCACTTTCACGTAAACAATCCATTGAGGACAATGGGAGACATGAGCAGACAATTCATGCAGTCGAACATGTCCCATCCTCATCTCTACTGTCCTTACCGTGTCAGGTAGAGGGATATTGACTGGGCGGTAGATCAAGTTACCAAGCTGTGcaagacagagacacaggaaaACACCAAACATATCAGATATATTCACAGCTCACTATTGACATTATTGacacatggagacatggaggacagggaccagagacacatggaggacagggaccagagacaCATGGAGGACAGgaaccagagagacatggaggacagggaccagagacaCATGGAGGACAGgaaccagagagaccagagacacatggaggacagggaccagagagacatggaggacagggaccagagagacaaggaggacaggaaccagagagaccagagagacatggaggacagggaccagagacacatggaggacagggaccagagacacatggaggacagaaacaagagagacatggaggacaggaaccagagagacatggaggacaggaaccagagagaccagagagacatggaggacagggaccagagacaCATGGAGGACAGGAAccaaagagaccagagagac

Function

NR:

description
collagen alpha-1(XVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1071586 True 2516 TUCP 0.47 3 7820520 7823317

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 318064 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 393257 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 769116 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1145198 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1340028 6379444 ~ 6480492 (+)
LOC110536543 LOC106579684 coding downstream 139692 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 146610 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 348555 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 351476 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 372290 8195607 ~ 8379328 (+)
G939542 NA non-coding upstream 1631 7815789 ~ 7818889 (+)
G939535 NA non-coding upstream 10487 7808448 ~ 7810033 (+)
G939518 NA non-coding upstream 30102 7774915 ~ 7790418 (+)
G939510 NA non-coding upstream 61257 7756949 ~ 7759263 (+)
G939493 NA non-coding upstream 100432 7719307 ~ 7720088 (+)
G939580 NA non-coding downstream 90654 7913971 ~ 7914317 (+)
G939607 NA non-coding downstream 150951 7974268 ~ 7974559 (+)
G939608 NA non-coding downstream 152422 7975739 ~ 7979846 (+)
G939619 NA non-coding downstream 168844 7992161 ~ 7992439 (+)
G939630 NA non-coding downstream 187167 8010484 ~ 8010832 (+)
G939408 NA other upstream 245611 7574352 ~ 7574909 (+)
G938723 NA other upstream 799096 7019151 ~ 7021424 (+)
G937889 NA other upstream 1698251 6121584 ~ 6122269 (+)
G937237 NA other upstream 2315191 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2675955 5143317 ~ 5144565 (+)
G939690 NA other downstream 316949 8140266 ~ 8140583 (+)
G940102 NA other downstream 551189 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 556530 8379847 ~ 8497020 (+)
G940247 NA other downstream 616163 8439480 ~ 8439775 (+)

Expression


Co-expression Network